RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 NTRK1P04629 796 aa9.71□□□□□ -0.86
NUP54-215ENST00000514313 CT47B1P0C2W7 299 aaPredicted RBP9.71□□□□□ -0.86
NUP54-215ENST00000514313 RBP3P10745 1247 aa9.71□□□□□ -0.86
NUP54-215ENST00000514313 ZP2Q05996 745 aa9.71□□□□□ -0.86
NUP54-215ENST00000514313 PGM2L1Q6PCE3 622 aa9.71□□□□□ -0.86
NUP54-215ENST00000514313 WFDC3Q8IUB2 231 aa9.71□□□□□ -0.86
NUP54-215ENST00000514313 NUP43Q8NFH3 380 aa9.71□□□□□ -0.86
NUP54-215ENST00000514313 BCL7CQ8WUZ0 217 aaPredicted RBP9.71□□□□□ -0.86
NUP54-215ENST00000514313 PLCD4Q9BRC7 762 aa9.71□□□□□ -0.86
NUP54-215ENST00000514313 ZDHHC5Q9C0B5 715 aa9.71□□□□□ -0.86
NUP54-215ENST00000514313 STK17AQ9UEE5 414 aa9.71□□□□□ -0.86
NUP54-215ENST00000514313 NOC2LQ9Y3T9 749 aaKnown RBP9.71□□□□□ -0.86
NUP54-215ENST00000514313 ATP23Q9Y6H3 246 aa9.71□□□□□ -0.86
NUP54-215ENST00000514313 A0A1W2PQ27 194 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 A0A1W2PQ64 194 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 A0A1W2PQC6 194 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 A0A1W2PQD8 194 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 CD8BP10966 210 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 TCIRG1Q13488 830 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 EMC4Q5J8M3 183 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 TMEM240Q5SV17 173 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 STEAP3Q658P3 488 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 ZNF574Q6ZN55 896 aaPredicted RBP9.7□□□□□ -0.86
NUP54-215ENST00000514313 PNMA8AQ86V59 439 aaPredicted RBP9.7□□□□□ -0.86
NUP54-215ENST00000514313 TPH2Q8IWU9 490 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 RBM12BQ8IXT5 1001 aaKnown RBP9.7□□□□□ -0.86
NUP54-215ENST00000514313 NLGN4XQ8N0W4 816 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 STK11IPQ8N1F8 1099 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 TCF7L1Q9HCS4 588 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 PDLIM7Q9NR12 457 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 ACSS2Q9NR19 701 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 KCNH7Q9NS40 1196 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 MKS1Q9NXB0 559 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 TELO2Q9Y4R8 837 aa9.7□□□□□ -0.86
NUP54-215ENST00000514313 NOTOA8MTQ0 251 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 SLC27A2O14975 620 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 PCDHGA12O60330 932 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 KDM1AO60341 852 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 GDF11O95390 407 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 EFEMP2O95967 443 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 CFBP00751 764 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 PROCP04070 461 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 PF4V1P10720 104 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 RECQLP46063 649 aaPredicted RBP9.69□□□□□ -0.86
NUP54-215ENST00000514313 KRT85P78386 507 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 ODF1Q14990 250 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 TMEM132BQ14DG7 1078 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 PDCD1Q15116 288 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 SLC14A2Q15849 920 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 MAP9Q49MG5 647 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 CC2D1AQ6P1N0 951 aaPredicted RBP9.69□□□□□ -0.86
NUP54-215ENST00000514313 GALNT18Q6P9A2 607 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 KCTD1Q719H9 257 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 CPA6Q8N4T0 437 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 LMBR1Q8WVP7 490 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 SP110Q9HB58 689 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 BSDC1Q9NW68 430 aaPredicted RBP9.69□□□□□ -0.86
NUP54-215ENST00000514313 ACSL6Q9UKU0 697 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 PCDHGA9Q9Y5G4 932 aaKnown RBP9.69□□□□□ -0.86
NUP54-215ENST00000514313 PCDHGA8Q9Y5G5 932 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 PCDHGA7Q9Y5G6 932 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 PCDHGA6Q9Y5G7 932 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 PCDHGA3Q9Y5H0 932 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 PCDHGA2Q9Y5H1 932 aa9.69□□□□□ -0.86
NUP54-215ENST00000514313 TRIM75PA6NK02 468 aa9.68□□□□□ -0.86
NUP54-215ENST00000514313 GOLGA8AA7E2F4 631 aa9.68□□□□□ -0.86
NUP54-215ENST00000514313 GOLGA8BA8MQT2 603 aa9.68□□□□□ -0.86
NUP54-215ENST00000514313 NRDCO43847 1150 aa9.68□□□□□ -0.86
NUP54-215ENST00000514313 CAND2O75155 1236 aa9.68□□□□□ -0.86
NUP54-215ENST00000514313 LTFP02788 710 aa9.68□□□□□ -0.86
NUP54-215ENST00000514313 PRKCAP17252 672 aa9.68□□□□□ -0.86
NUP54-215ENST00000514313 HK2P52789 917 aa9.68□□□□□ -0.86
NUP54-215ENST00000514313 CXorf57Q6NSI4 855 aaKnown RBP9.68□□□□□ -0.86
NUP54-215ENST00000514313 SPRED2Q7Z698 418 aa9.68□□□□□ -0.86
NUP54-215ENST00000514313 CD40P25942 277 aa9.67□□□□□ -0.86
NUP54-215ENST00000514313 GPR3P46089 330 aa9.67□□□□□ -0.86
NUP54-215ENST00000514313 SLC6A11P48066 632 aa9.67□□□□□ -0.86
NUP54-215ENST00000514313 CYP4F22Q6NT55 531 aa9.67□□□□□ -0.86
NUP54-215ENST00000514313 PRDM7Q9NQW5 492 aa9.67□□□□□ -0.86
NUP54-215ENST00000514313 CCM2LQ9NUG4 571 aaPredicted RBP9.67□□□□□ -0.86
NUP54-215ENST00000514313 SLC5A6Q9Y289 635 aa9.67□□□□□ -0.86
NUP54-215ENST00000514313 ZNF652Q9Y2D9 606 aa9.67□□□□□ -0.86
NUP54-215ENST00000514313 GIT1Q9Y2X7 761 aa9.67□□□□□ -0.86
NUP54-215ENST00000514313 GOLGA6CA6NDK9 693 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 GOLGA6BA6NDN3 693 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 FAM90A27PA6NNH2 459 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 XPOTO43592 962 aaKnown RBP9.66□□□□□ -0.86
NUP54-215ENST00000514313 MAFKO60675 156 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 TADA3O75528 432 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 CYP17A1P05093 508 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 TMEM253P0C7T8 217 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 GOLGA6DP0CG33 693 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 EPHA5P54756 1037 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 CHRNEQ04844 493 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 CHRNA2Q15822 529 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 GFOD2Q3B7J2 385 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 FRMD7Q6ZUT3 714 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 CMTR2Q8IYT2 770 aaKnown RBP9.66□□□□□ -0.86
NUP54-215ENST00000514313 PDZD8Q8NEN9 1154 aa9.66□□□□□ -0.86
NUP54-215ENST00000514313 RTF1Q92541 710 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms