RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PCSK9Q8NBP7 692 aaKnown RBP16.87■□□□□ 0.29
NUP54-213ENST00000513352 SEPT1Q8WYJ6 367 aa16.87■□□□□ 0.29
NUP54-213ENST00000513352 MTMR9Q96QG7 549 aa16.87■□□□□ 0.29
NUP54-213ENST00000513352 GPR20Q99678 358 aa16.87■□□□□ 0.29
NUP54-213ENST00000513352 OGDHLQ9ULD0 1010 aa16.87■□□□□ 0.29
NUP54-213ENST00000513352 TELO2Q9Y4R8 837 aa16.87■□□□□ 0.29
NUP54-213ENST00000513352 TCHHQ07283 1943 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 POTEFA5A3E0 1075 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 WDR64B1ANS9 1081 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 BACH1O14867 736 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 CCNE2O96020 404 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 ZNF286BP0CG31 522 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 TCF7P36402 384 aaPredicted RBP16.86■□□□□ 0.29
NUP54-213ENST00000513352 TECP42680 631 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 JAK3P52333 1124 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 ZNF746Q6NUN9 644 aaPredicted RBP16.86■□□□□ 0.29
NUP54-213ENST00000513352 DTHD1Q6ZMT9 781 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 C4orf32Q8N8J7 132 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 VTI1AQ96AJ9 217 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 CHAMP1Q96JM3 812 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 CRISPLD2Q9H0B8 497 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 VAV3Q9UKW4 847 aa16.86■□□□□ 0.29
NUP54-213ENST00000513352 VWA3AA6NCI4 1184 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 A6NJR5 290 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 DNM1LO00429 736 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 CTAGE5O15320 804 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 ASGR1P07306 291 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 PSAPP07602 524 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 CST5P28325 142 aaPredicted RBP16.85■□□□□ 0.29
NUP54-213ENST00000513352 MARCKSP29966 332 aaPredicted RBP16.85■□□□□ 0.29
NUP54-213ENST00000513352 PRPHP41219 470 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 SOX10P56693 466 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 KRT85P78386 507 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 ATL3Q6DD88 541 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 SMAP1Q8IYB5 467 aaPredicted RBP16.85■□□□□ 0.29
NUP54-213ENST00000513352 KLHDC9Q8NEP7 349 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 RAB34Q9BZG1 259 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 AZI2Q9H6S1 392 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 DISC1Q9NRI5 854 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 POLR3EQ9NVU0 708 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 CFAP45Q9UL16 551 aa16.85■□□□□ 0.29
NUP54-213ENST00000513352 MYH9P35579 1960 aaKnown RBP16.85■□□□□ 0.29
NUP54-213ENST00000513352 GSTTP1A0A1W2PQM5 241 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 POTEMA6NI47 508 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 LGALS2P05162 132 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 SUPT20HL2P0C7V6 817 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 EN2P19622 333 aaPredicted RBP16.84■□□□□ 0.29
NUP54-213ENST00000513352 SFNP31947 248 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 PPP2R5CQ13362 524 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 PTPAQ15257 358 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 FAM160B1Q5W0V3 765 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 CXCL17Q6UXB2 119 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 TRIM50Q86XT4 487 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 GLG1Q92896 1179 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 FERMT2Q96AC1 680 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 PCDHA10Q9Y5I2 948 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 WDR81Q562E7 1941 aa16.84■□□□□ 0.29
NUP54-213ENST00000513352 MOXD2PA6NHM9 499 aa16.83■□□□□ 0.28
NUP54-213ENST00000513352 EML1O00423 815 aa16.83■□□□□ 0.28
NUP54-213ENST00000513352 SPTLC2O15270 562 aa16.83■□□□□ 0.28
NUP54-213ENST00000513352 KPNA6O60684 536 aa16.83■□□□□ 0.28
NUP54-213ENST00000513352 PPFIA4O75335 1185 aa16.83■□□□□ 0.28
NUP54-213ENST00000513352 YEATS4O95619 227 aa16.83■□□□□ 0.28
NUP54-213ENST00000513352 MARK3P27448 753 aa16.83■□□□□ 0.28
NUP54-213ENST00000513352 NASPP49321 788 aaPredicted RBP16.83■□□□□ 0.28
NUP54-213ENST00000513352 ACLYP53396 1101 aa16.83■□□□□ 0.28
NUP54-213ENST00000513352 NKX3-2P78367 333 aa16.83■□□□□ 0.28
NUP54-213ENST00000513352 SLC39A14Q15043 492 aa16.83■□□□□ 0.28
NUP54-213ENST00000513352 ARL6IP4Q66PJ3 421 aaKnown RBP16.83■□□□□ 0.28
NUP54-213ENST00000513352 SWSAP1Q6NVH7 229 aa16.83■□□□□ 0.28
NUP54-213ENST00000513352 TSEN34Q9BSV6 310 aaKnown RBP16.83■□□□□ 0.28
NUP54-213ENST00000513352 MTG1Q9BT17 334 aaPredicted RBP16.83■□□□□ 0.28
NUP54-213ENST00000513352 ZNF215Q9UL58 517 aaPredicted RBP16.83■□□□□ 0.28
NUP54-213ENST00000513352 FXR2P51116 673 aaKnown RBP eCLIP16.82■□□□□ 0.28
NUP54-213ENST00000513352 PURAQ00577 322 aaKnown RBP16.82■□□□□ 0.28
NUP54-213ENST00000513352 SPIRE1Q08AE8 756 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 PDXDC2PQ6P474 469 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 ABHD15Q6UXT9 468 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 TRMT1LQ7Z2T5 733 aaKnown RBP16.82■□□□□ 0.28
NUP54-213ENST00000513352 CKAP2LQ8IYA6 745 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 ANKLE1Q8NAG6 615 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 LINC00301Q8NCQ3 95 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 RDM1Q8NG50 284 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 ERMNQ8TAM6 284 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 DIS3LQ8TF46 1054 aaKnown RBP16.82■□□□□ 0.28
NUP54-213ENST00000513352 SPATA32Q96LK8 384 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 SMARCAD1Q9H4L7 1026 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 ZNF302Q9NR11 478 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 GABBR1Q9UBS5 961 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 LRWD1Q9UFC0 647 aa16.82■□□□□ 0.28
NUP54-213ENST00000513352 EMSYQ7Z589 1322 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 A0A1W2PQ45 241 aaPredicted RBP16.81■□□□□ 0.28
NUP54-213ENST00000513352 A0A1W2PQY0 241 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 ATG7O95352 703 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 HOXD8P13378 290 aaPredicted RBP16.81■□□□□ 0.28
NUP54-213ENST00000513352 CAPN2P17655 700 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 ME1P48163 572 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 STAT5BP51692 787 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 PSMC6P62333 389 aa16.81■□□□□ 0.28
NUP54-213ENST00000513352 CYP4A11Q02928 519 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms