RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-210	ENST00000485247	CHD7	Q9P2D1	2997 aa		6.58	□□□□□ -1.36
PTPN4-210	ENST00000485247	SMCHD1	A6NHR9	2005 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	MROH7	Q68CQ1	1323 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	DCX	O43602	365 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	ADAMTS4	O75173	837 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	IL9	P15248	144 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	ACPP	P15309	386 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	ATP2A2	P16615	1042 aa	Known RBP	6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	VCAM1	P19320	739 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	MZF1	P28698	734 aa	Predicted RBP	6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	MECOM	Q03112	1051 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	SETDB1	Q15047	1291 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	RALBP1	Q15311	655 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	ATP2B3	Q16720	1220 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	TMEM67	Q5HYA8	995 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	XKR5	Q6UX68	686 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	CEP120	Q8N960	986 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	C1orf127	Q8N9H9	656 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	ZNF384	Q8TF68	577 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	C12orf42	Q96LP6	360 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	GLT1D1	Q96MS3	346 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	CHRD	Q9H2X0	955 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	DNAJC18	Q9H819	358 aa		6.57	□□□□□ -1.36
PTPN4-210	ENST00000485247	UMODL1	Q5DID0	1318 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	MYADML2	A6NDP7	307 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	EYA2	O00167	538 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	TLR3	O15455	904 aa	Known RBP	6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	GH2	P01242	217 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	AKR1A1	P14550	325 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	NOS3	P29474	1203 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	CDK7	P50613	346 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	CCL23	P55773	120 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	GRB10	Q13322	594 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	ZNF211	Q13398	564 aa	Predicted RBP	6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	RASGRF1	Q13972	1273 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	PLS1	Q14651	629 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	CEP135	Q66GS9	1140 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	SPTY2D1	Q68D10	685 aa	Predicted RBP	6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	IGF2-AS	Q6U949	168 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	LBX2	Q6XYB7	198 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	NCAPG2	Q86XI2	1143 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	FAM126B	Q8IXS8	530 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	TEX11	Q8IYF3	940 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	KLHDC9	Q8NEP7	349 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	PRSS33	Q8NF86	280 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	WFDC12	Q8WWY7	111 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	MFSD14A	Q96MC6	490 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	SPATC1L	Q9H0A9	340 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	DHX36	Q9H2U1	1008 aa	Known RBP	6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	HIPK3	Q9H422	1215 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	RPAP3	Q9H6T3	665 aa	Predicted RBP	6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	ANO2	Q9NQ90	1003 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	GINM1	Q9NU53	330 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	NRBP1	Q9UHY1	535 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	POLI	Q9UNA4	740 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247		A0A0G2JMZ2	1700 aa		6.56	□□□□□ -1.36
PTPN4-210	ENST00000485247	WDFY4	Q6ZS81	3184 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	ELP1	O95163	1332 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	SYNRG	Q9UMZ2	1314 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247		A0A0U1RQG5	324 aa	Predicted RBP	6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	ARVCF	O00192	962 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	TM4SF5	O14894	197 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	FZD6	O60353	706 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	LPXN	O60711	386 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	VAMP4	O75379	141 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	PGK2	P07205	417 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	ASGR1	P07306	291 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	ZNF865	P0CJ78	1059 aa	Predicted RBP	6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	KCNA5	P22460	613 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	ADORA1	P30542	326 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	TAP1	Q03518	808 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	RAB3GAP1	Q15042	981 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	LEXM	Q3ZCV2	418 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	CCSAP	Q6IQ19	270 aa	Predicted RBP	6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	TXNDC11	Q6PKC3	985 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	ATG9A	Q7Z3C6	839 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	FOXP4	Q8IVH2	680 aa	Predicted RBP	6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	GALNT11	Q8NCW6	608 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	SHCBP1	Q8NEM2	672 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	ACER1	Q8TDN7	264 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	TINF2	Q9BSI4	451 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	LACRT	Q9GZZ8	138 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	SIL1	Q9H173	461 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	MROH8	Q9H579	483 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	UBE2Z	Q9H832	354 aa	Predicted RBP	6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	FAM86C1	Q9NVL1	165 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	SALL4	Q9UJQ4	1053 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	PALD1	Q9ULE6	856 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	UST	Q9Y2C2	406 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	ZNF236	Q9UL36	1845 aa		6.55	□□□□□ -1.36
PTPN4-210	ENST00000485247	ZDBF2	Q9HCK1	2354 aa		6.54	□□□□□ -1.36
PTPN4-210	ENST00000485247	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	6.54	□□□□□ -1.36
PTPN4-210	ENST00000485247	LINC01387	J3KSC0	135 aa		6.54	□□□□□ -1.36
PTPN4-210	ENST00000485247	MAP4K4	O95819	1239 aa	Predicted RBP	6.54	□□□□□ -1.36
PTPN4-210	ENST00000485247	ABL1	P00519	1130 aa		6.54	□□□□□ -1.36
PTPN4-210	ENST00000485247	CD4	P01730	458 aa		6.54	□□□□□ -1.36
PTPN4-210	ENST00000485247	RPLP1	P05386	114 aa	Known RBP	6.54	□□□□□ -1.36
PTPN4-210	ENST00000485247	LDHC	P07864	332 aa		6.54	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms