RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 TRAPPC8Q9Y2L5 1435 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 NOTOA8MTQ0 251 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 DGKIO75912 1065 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 AMY2AP04746 511 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 MSL3P1P0C860 447 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 YBX3P16989 372 aaKnown RBP eCLIP7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 AMY2BP19961 511 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 SPINK2P20155 84 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 TACR1P25103 407 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 SSTR4P31391 388 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 MVKQ03426 396 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 CHRNEQ04844 493 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 KIR3DS1Q14943 382 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 ARHGAP44Q17R89 818 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 HABP4Q5JVS0 413 aaKnown RBP7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 CREB3L3Q68CJ9 461 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 GALNT18Q6P9A2 607 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 NFXL1Q6ZNB6 911 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 ARHGAP36Q6ZRI8 547 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 OTOP1Q7RTM1 612 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 OTOP3Q7RTS5 596 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 PDZD8Q8NEN9 1154 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 MTMR8Q96EF0 704 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 PLCD4Q9BRC7 762 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 EMC7Q9NPA0 242 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 SPTLC3Q9NUV7 552 aa7.56□□□□□ -1.2
RNU4-39P-201ENST00000362455 ARHGAP35Q9NRY4 1499 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 TCRBV5S4A2TA0A5A2 114 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 KCNK3O14649 394 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 NKRFO15226 690 aaKnown RBP eCLIP7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 NRDCO43847 1150 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 KRT37O76014 449 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 FUT4P22083 530 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 CD97P48960 835 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 KPNA1P52294 538 aaPredicted RBP7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 OCRLQ01968 901 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 ITKQ08881 620 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 ATP13A4Q4VNC1 1196 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 MROH9Q5TGP6 573 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 PTRH1Q86Y79 214 aaKnown RBP7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 RIOX2Q8IUF8 465 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 SPPL2CQ8IUH8 684 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 OXR1Q8N573 874 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 NUP43Q8NFH3 380 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 PIP4K2CQ8TBX8 421 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 TRIM8Q9BZR9 551 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 PUS7LQ9H0K6 701 aaKnown RBP7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 CCDC8Q9H0W5 538 aaPredicted RBP7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 PAK6Q9NQU5 681 aaPredicted RBP7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 PDLIM7Q9NR12 457 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 OXSMQ9NWU1 459 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 H2AFY2Q9P0M6 372 aaPredicted RBP7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 ACSL6Q9UKU0 697 aa7.55□□□□□ -1.2
RNU4-39P-201ENST00000362455 SLC12A8A0AV02 714 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 FITM1A5D6W6 292 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 KIAA1324LA8MWY0 1029 aaPredicted RBP7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 ALDH1L1O75891 902 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 EFEMP2O95967 443 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 PRKCAP17252 672 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 FSTL4Q6MZW2 842 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 SLC23A3Q6PIS1 610 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 HHIPL2Q6UWX4 724 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 C11orf74Q86VG3 221 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 CNTD1Q8N815 330 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 CCDC120Q96HB5 630 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 BOCQ9BWV1 1114 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 SLC6A20Q9NP91 592 aa7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 ANGEL1Q9UNK9 670 aaKnown RBP7.54□□□□□ -1.2
RNU4-39P-201ENST00000362455 PTPRTO14522 1441 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 TROQ12816 1431 aaPredicted RBP7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 UHRF1BP1Q6BDS2 1440 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 MAN2B1O00754 1011 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 PRKD3O94806 890 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 NTRK1P04629 796 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 ERVFC1P60507 584 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 TTF1Q15361 905 aaPredicted RBP7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 ZMYM1Q5SVZ6 1142 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 IQSEC1Q6DN90 963 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 RAVER1Q8IY67 606 aaKnown RBP7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 SH3RF2Q8TEC5 729 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 SMAD5Q99717 465 aaKnown RBP7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 SP110Q9HB58 689 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 C19orf73Q9NVV2 129 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 CHPF2Q9P2E5 772 aa7.53□□□□□ -1.2
RNU4-39P-201ENST00000362455 LTBP4Q8N2S1 1624 aa7.52□□□□□ -1.2
RNU4-39P-201ENST00000362455 ZNF518AQ6AHZ1 1483 aa7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 MLH3Q9UHC1 1453 aa7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 H7C1D1 291 aa7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 PSPNO60542 156 aa7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 ZBTB48P10074 688 aaPredicted RBP7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 IRF9Q00978 393 aa7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 NR0B2Q15466 257 aa7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 TIGD5Q53EQ6 642 aa7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 HDGFL2Q7Z4V5 671 aaPredicted RBP7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 NOSTRINQ8IVI9 506 aa7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 EFHBQ8N7U6 833 aa7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 UHMK1Q8TAS1 419 aaKnown RBP7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 CD244Q9BZW8 370 aa7.52□□□□□ -1.21
RNU4-39P-201ENST00000362455 C19orf44Q9H6X5 657 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms