RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PTPN1P18031 435 aaKnown RBP4.7□□□□□ -1.66
HMGB1-201ENST00000326004 LSSP48449 732 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 IL2P60568 153 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 ZNF200P98182 395 aaPredicted RBP4.7□□□□□ -1.66
HMGB1-201ENST00000326004 ZNF174Q15697 407 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 BTBD8Q5XKL5 378 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 TMEM132EQ6IEE7 984 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 ZC3H18Q86VM9 953 aaKnown RBP4.7□□□□□ -1.66
HMGB1-201ENST00000326004 NXPE1Q8N323 547 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 SMC1BQ8NDV3 1235 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 CLEC4DQ8WXI8 215 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 DLG3Q92796 817 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 TOE1Q96GM8 510 aaKnown RBP4.7□□□□□ -1.66
HMGB1-201ENST00000326004 MCOLN1Q9GZU1 580 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 IFT22Q9H7X7 185 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 APOBEC2Q9Y235 224 aaKnown RBP4.7□□□□□ -1.66
HMGB1-201ENST00000326004 ATP8A1Q9Y2Q0 1164 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 TELO2Q9Y4R8 837 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 B3GALT1Q9Y5Z6 326 aa4.7□□□□□ -1.66
HMGB1-201ENST00000326004 MYOCOSA0A1B0GUC4 107 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 SCDO00767 359 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 KCNK3O14649 394 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 KRT37O76014 449 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 FKBP9O95302 570 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 EYA4O95677 639 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 LTFP02788 710 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 ASGR2P07307 311 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 ATP2A2P16615 1042 aaKnown RBP4.69□□□□□ -1.66
HMGB1-201ENST00000326004 FAHP16930 419 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 YBX3P16989 372 aaKnown RBP eCLIP4.69□□□□□ -1.666e-17■■□□□ 12.5
HMGB1-201ENST00000326004 PFKLP17858 780 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 POU3F3P20264 500 aaPredicted RBP4.69□□□□□ -1.66
HMGB1-201ENST00000326004 FBLN1P23142 703 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 PMLP29590 882 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 SDHAP31040 664 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 KPNA1P52294 538 aaPredicted RBP4.69□□□□□ -1.66
HMGB1-201ENST00000326004 ANAPC15P60006 121 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 IGBP1P78318 339 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 CACNB2Q08289 660 aaPredicted RBP4.69□□□□□ -1.66
HMGB1-201ENST00000326004 STRN3Q13033 797 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 SKOR2Q2VWA4 1001 aaPredicted RBP4.69□□□□□ -1.66
HMGB1-201ENST00000326004 PAN2Q504Q3 1202 aaKnown RBP4.69□□□□□ -1.66
HMGB1-201ENST00000326004 CC2D1AQ6P1N0 951 aaPredicted RBP4.69□□□□□ -1.66
HMGB1-201ENST00000326004 FKBP9P1Q75LS8 142 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 STRA8Q7Z7C7 330 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 C11orf74Q86VG3 221 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 LDHDQ86WU2 507 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 PASD1Q8IV76 773 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 ANKRD13AQ8IZ07 590 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 EFHBQ8N7U6 833 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 DDX11Q96FC9 970 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 PCIF1Q9H4Z3 704 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 CNTD2Q9H8S5 307 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 PCDH18Q9HCL0 1135 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 ACSS2Q9NR19 701 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 RIC8BQ9NVN3 520 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 MBD1Q9UIS9 605 aaPredicted RBP4.69□□□□□ -1.66
HMGB1-201ENST00000326004 SPO11Q9Y5K1 396 aa4.69□□□□□ -1.66
HMGB1-201ENST00000326004 FAM90A27PA6NNH2 459 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 BUB1BO60566 1050 aaPredicted RBP4.68□□□□□ -1.66
HMGB1-201ENST00000326004 C4BPAP04003 597 aaKnown RBP4.68□□□□□ -1.66
HMGB1-201ENST00000326004 CYP17A1P05093 508 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 ADCYAP1R1P41586 468 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 FNTBP49356 437 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 KIF11P52732 1056 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 HERVK_113P62684 666 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 NKX3-2P78367 333 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 GRIN1Q05586 938 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 XP32Q5T750 250 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 RNF219Q5W0B1 726 aaPredicted RBP4.68□□□□□ -1.66
HMGB1-201ENST00000326004 CPZQ66K79 652 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 CREB3L3Q68CJ9 461 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 DDX42Q86XP3 938 aaKnown RBP eCLIP4.68□□□□□ -1.66
HMGB1-201ENST00000326004 RBM12BQ8IXT5 1001 aaKnown RBP4.68□□□□□ -1.66
HMGB1-201ENST00000326004 KIAA1958Q8N8K9 716 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 ATL2Q8NHH9 583 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 CHTF18Q8WVB6 975 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 GPR101Q96P66 508 aaPredicted RBP4.68□□□□□ -1.66
HMGB1-201ENST00000326004 BCAS3Q9H6U6 928 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 OXSMQ9NWU1 459 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 THG1LQ9NWX6 298 aaKnown RBP4.68□□□□□ -1.66
HMGB1-201ENST00000326004 PCDHA5Q9Y5H7 936 aa4.68□□□□□ -1.66
HMGB1-201ENST00000326004 PRAMEF25A6NGN4 478 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 ALG1L2C9J202 215 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 ACOT7O00154 380 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 N4BP3O15049 544 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 ULK1O75385 1050 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 LRG1P02750 347 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 CDR1P51861 262 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 STAT4Q14765 748 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 FSTL4Q6MZW2 842 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 TEPPQ6URK8 271 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 B3GNT8Q7Z7M8 397 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 SPATS2Q86XZ4 545 aaKnown RBP4.67□□□□□ -1.66
HMGB1-201ENST00000326004 ZZZ3Q8IYH5 903 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 WDR66Q8TBY9 1149 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 MZB1Q8WU39 189 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 FAM84AQ96KN4 292 aa4.67□□□□□ -1.66
HMGB1-201ENST00000326004 PUS7Q96PZ0 661 aaKnown RBP4.67□□□□□ -1.66
HMGB1-201ENST00000326004 FAM126AQ9BYI3 521 aaPredicted RBP4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 167.2 ms