RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PPARGP37231 505 aaPredicted RBP14.92□□□□□ -0.02
CSPG4-201ENST00000308508 BZW1Q7L1Q6 419 aaKnown RBP14.92□□□□□ -0.02
CSPG4-201ENST00000308508 OSBPL1AQ9BXW6 950 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 MLXIPQ9HAP2 919 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 ZBED6P86452 979 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 SLC39A14Q15043 492 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 G2E3Q7L622 706 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 ZNF790Q6PG37 636 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 VSTM4Q8IW00 320 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 ACRBPQ8NEB7 543 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 COPEO14579 308 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 XPOTO43592 962 aaKnown RBP14.92□□□□□ -0.02
CSPG4-201ENST00000308508 SLFNL1Q499Z3 407 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 PCDHA5Q9Y5H7 936 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 SYNGAP1Q96PV0 1343 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 DPCR1Q3MIW9 517 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 ANGPTL8Q6UXH0 198 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 MAPKAPK5Q8IW41 473 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 THAP9Q9H5L6 903 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 SLC12A6Q9UHW9 1150 aa14.92□□□□□ -0.02
CSPG4-201ENST00000308508 GMNCA6NCL1 334 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 LRRIQ4A6NIV6 560 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 CARSP49589 748 aaKnown RBP14.91□□□□□ -0.02
CSPG4-201ENST00000308508 CAV1Q03135 178 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 FAM133AQ8N9E0 248 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 PARD3BQ8TEW8 1205 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 KIAA1024Q9UPX6 916 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 HNRNPDLO14979 420 aaKnown RBP14.91□□□□□ -0.02
CSPG4-201ENST00000308508 DYNLT1P63172 113 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.91□□□□□ -0.02
CSPG4-201ENST00000308508 DNAJC6O75061 913 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 RASA4BC9J798 803 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 RASA4O43374 803 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 LRRN2O75325 713 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 CALN1Q9BXU9 219 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 KLC2Q9H0B6 622 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 SLC5A4Q9NY91 659 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 CEP55Q53EZ4 464 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 CPSF3Q9UKF6 684 aaKnown RBP14.91□□□□□ -0.02
CSPG4-201ENST00000308508 TJP3O95049 919 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 TRAPPC3LQ5T215 181 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 RNF103-CHMP3A0A140T963 221 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 CCDC90BQ9GZT6 254 aa14.91□□□□□ -0.02
CSPG4-201ENST00000308508 GSPT1P15170 499 aaKnown RBP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 VPS39Q96JC1 886 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 MAPKBP1O60336 1514 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 BTBD18B2RXH4 712 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 H0Y626 953 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 TRIM16O95361 564 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 CMTR1Q8N1G2 835 aaKnown RBP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 PNMA1Q8ND90 353 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 KPNA7A9QM74 516 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 DEAF1O75398 565 aaPredicted RBP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 PDCLQ13371 301 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 CAPRIN1Q14444 709 aaKnown RBP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 PODNQ7Z5L7 613 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 URB2Q14146 1524 aaKnown RBP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 PRPSAP2O60256 369 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 NOP9Q86U38 636 aaKnown RBP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 NR1H4Q96RI1 486 aaPredicted RBP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 G3BP2Q9UN86 482 aaKnown RBP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 KLRF2D3W0D1 207 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 HSPD1P10809 573 aaKnown RBP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 EIF4A3P38919 411 aaKnown RBP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 SCRN1Q12765 414 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 TFDP1Q14186 410 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 GAS2L3Q86XJ1 694 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 SUCLG2Q96I99 432 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 FBXO31Q5XUX0 539 aaPredicted RBP14.9□□□□□ -0.02
CSPG4-201ENST00000308508 TTC17Q96AE7 1141 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 TFCP2L1Q9NZI6 479 aa14.9□□□□□ -0.02
CSPG4-201ENST00000308508 KRT75O95678 551 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 AARSP49588 968 aaKnown RBP eCLIP14.89□□□□□ -0.03
CSPG4-201ENST00000308508 FAM193BQ96PV7 902 aaPredicted RBP14.89□□□□□ -0.03
CSPG4-201ENST00000308508 AP1M1Q9BXS5 423 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 ECT2Q9H8V3 914 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 GOLGA8FQ08AF8 430 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 GOLGA8DPQ0D2H9 430 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 FAM160B1Q5W0V3 765 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 EP400NLQ6ZTU2 488 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 RAPGEF5Q92565 580 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 LRRC59Q96AG4 307 aaKnown RBP14.89□□□□□ -0.03
CSPG4-201ENST00000308508 TAF5LO75529 589 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 KRT38O76015 456 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 POLD1P28340 1107 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 DRP2Q13474 957 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 C11orf57Q6ZUT1 292 aaPredicted RBP14.89□□□□□ -0.03
CSPG4-201ENST00000308508 IFNL3Q8IZI9 196 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 LZICQ8WZA0 190 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 ASPSCR1Q9BZE9 553 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 TMEM206Q9H813 350 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 MAN1B1Q9UKM7 699 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 FRMPD2Q68DX3 1309 aaPredicted RBP14.89□□□□□ -0.03
CSPG4-201ENST00000308508 SYCP2Q9BX26 1530 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 GCKRQ14397 625 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 TCP10Q12799 353 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 PKP1Q13835 747 aa14.89□□□□□ -0.03
CSPG4-201ENST00000308508 CCDC85BQ15834 202 aaPredicted RBP14.89□□□□□ -0.03
CSPG4-201ENST00000308508 RHOT2Q8IXI1 618 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms