RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 DPP8Q6V1X1 898 aaPredicted RBP20.93■□□□□ 0.94
USP48-201ENST00000308271 TPX2Q9ULW0 747 aaKnown RBP20.93■□□□□ 0.94
USP48-201ENST00000308271 DDX39AO00148 427 aaKnown RBP20.93■□□□□ 0.94
USP48-201ENST00000308271 BTDP43251 543 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 ORC2Q13416 577 aaPredicted RBP20.93■□□□□ 0.94
USP48-201ENST00000308271 ODR4Q5SWX8 454 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 CAPN12Q6ZSI9 719 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 DPH6Q7L8W6 267 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 SCYL3Q8IZE3 742 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 RSAD2Q8WXG1 361 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 ZNF653Q96CK0 615 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 MXD3Q9BW11 206 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 TMEM51Q9NW97 253 aa20.93■□□□□ 0.94
USP48-201ENST00000308271 SSU72P8A0A1W2PR75 194 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 ARHGAP42A6NI28 874 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 SEPT6Q14141 434 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 LRIG3Q6UXM1 1119 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 OGFOD1Q8N543 542 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 LRRN4CLQ8ND94 238 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 CCSER1Q9C0I3 900 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 CAMSAP1Q5T5Y3 1602 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 RFX5P48382 616 aaPredicted RBP20.92■□□□□ 0.94
USP48-201ENST00000308271 TXNRD1Q16881 649 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 FBXL5Q9UKA1 691 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 OPHN1O60890 802 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 HNRNPH1P31943 449 aaKnown RBP20.92■□□□□ 0.94
USP48-201ENST00000308271 MYO1EQ12965 1108 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 RBM26Q5T8P6 1007 aaKnown RBP20.92■□□□□ 0.94
USP48-201ENST00000308271 TRAPPC11Q7Z392 1133 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 C1orf112Q9NSG2 853 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 AGPAT5Q9NUQ2 364 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 RAB21Q9UL25 225 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 SYNGAP1Q96PV0 1343 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 CDHR2Q9BYE9 1310 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 ATP5HO75947 161 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 MFAP3P55082 362 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 AOC3Q16853 763 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 STAG2Q8N3U4 1231 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 ISCA1Q9BUE6 129 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 PHF20Q9BVI0 1012 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 DNAJC5Q9H3Z4 198 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 ZNF446Q9NWS9 450 aa20.92■□□□□ 0.94
USP48-201ENST00000308271 ZNF804BA4D1E1 1349 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 SLC20A2Q08357 652 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 ANKRD40Q6AI12 368 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 PNPLA7Q6ZV29 1317 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 MAPK13O15264 365 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 LRRN2O75325 713 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 ATP2A3Q93084 1043 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 VCX3AQ9NNX9 186 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 CHD1O14646 1710 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 CLIC2O15247 247 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 ATF7P17544 494 aaPredicted RBP20.91■□□□□ 0.94
USP48-201ENST00000308271 NSFP46459 744 aaKnown RBP20.91■□□□□ 0.94
USP48-201ENST00000308271 PMS2P54278 862 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 TRPC3Q13507 836 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 CYP4F22Q6NT55 531 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 CFAP57Q96MR6 1250 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 NEURL4Q96JN8 1562 aa20.91■□□□□ 0.94
USP48-201ENST00000308271 LRRIQ3A6PVS8 624 aaPredicted RBP20.9■□□□□ 0.94
USP48-201ENST00000308271 PSMC4P43686 418 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 ADCY1Q08828 1119 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 BFSP1Q12934 665 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 FBXO11Q86XK2 927 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 GDAP1Q8TB36 358 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 AGXT2Q9BYV1 514 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 KCNG1Q9UIX4 513 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 USP17L8P0C7I0 530 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 HARSP12081 509 aaKnown RBP20.9■□□□□ 0.94
USP48-201ENST00000308271 TMED2Q15363 201 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 USP17L2Q6R6M4 530 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 PP2D1A8MPX8 630 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 PPP1R3GB7ZBB8 358 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 RHOBTB3O94955 611 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 TNNI1P19237 187 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 ELF1P32519 619 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 TRIM11Q96F44 468 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 PITPNM3Q9BZ71 974 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 ANKZF1Q9H8Y5 726 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 TRIM28Q13263 835 aaKnown RBP20.9■□□□□ 0.94
USP48-201ENST00000308271 MIER3Q7Z3K6 550 aa20.9■□□□□ 0.94
USP48-201ENST00000308271 FAM187AA6NFU0 413 aa20.89■□□□□ 0.94
USP48-201ENST00000308271 MAPK4P31152 587 aa20.89■□□□□ 0.94
USP48-201ENST00000308271 BPIFB4P59827 614 aa20.89■□□□□ 0.94
USP48-201ENST00000308271 TRAPPC3LQ5T215 181 aa20.89■□□□□ 0.94
USP48-201ENST00000308271 PDCD7Q8N8D1 485 aaKnown RBP20.89■□□□□ 0.94
USP48-201ENST00000308271 COA7Q96BR5 231 aa20.89■□□□□ 0.94
USP48-201ENST00000308271 ZIM3Q96PE6 472 aa20.89■□□□□ 0.94
USP48-201ENST00000308271 TBK1Q9UHD2 729 aa20.89■□□□□ 0.94
USP48-201ENST00000308271 FAM205CA6NFA0 338 aa20.89■□□□□ 0.93
USP48-201ENST00000308271 KRT14P02533 472 aa20.89■□□□□ 0.93
USP48-201ENST00000308271 KCNH2Q12809 1159 aa20.89■□□□□ 0.93
USP48-201ENST00000308271 SNX1Q13596 522 aa20.89■□□□□ 0.93
USP48-201ENST00000308271 TRIM9Q9C026 710 aa20.89■□□□□ 0.93
USP48-201ENST00000308271 YY1AP1Q9H869 796 aa20.89■□□□□ 0.93
USP48-201ENST00000308271 ABCA9Q8IUA7 1624 aa20.89■□□□□ 0.93
USP48-201ENST00000308271 SASH3O75995 380 aa20.89■□□□□ 0.93
USP48-201ENST00000308271 SP4Q02446 784 aa20.89■□□□□ 0.93
USP48-201ENST00000308271 OTUD6AQ7L8S5 288 aa20.89■□□□□ 0.93
USP48-201ENST00000308271 NT5C1BQ96P26 610 aa20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms