RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 TBK1Q9UHD2 729 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 AOX1Q06278 1338 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 UFL1O94874 794 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 CNBD1Q8NA66 436 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 EIF2AK4Q9P2K8 1649 aaKnown RBP14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 SBNO1A3KN83 1393 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 TK2O00142 265 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 SLC27A2O14975 620 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 PNOCQ13519 176 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 MAPRE2Q15555 327 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 LRRC8AQ8IWT6 810 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 FLCNQ8NFG4 579 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 C16orf96A6NNT2 1141 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 KRT14P02533 472 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 VCPP55072 806 aaKnown RBP14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 TRIM54Q9BYV2 358 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 KIAA1468Q9P260 1216 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 MSH6P52701 1360 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 KIAA1755Q5JYT7 1200 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 BLZF1Q9H2G9 400 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 EPB41L5Q9HCM4 733 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 SMYD3Q9H7B4 428 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 ADAM9Q13443 819 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 E4F1Q66K89 784 aaPredicted RBP14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 RGS9BPQ6ZS82 235 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 TBC1D19Q8N5T2 526 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 ARHGEF3Q9NR81 526 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 TJP3O95049 919 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 IGHDP01880 384 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 KRT1P04264 644 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 CAPZA2P47755 286 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 COPB1P53618 953 aaKnown RBP14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 RGL1Q9NZL6 768 aa14.95□□□□□ -0.02
CCDC88A-201ENST00000263630 MAP4P27816 1152 aaKnown RBP14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 MXD4Q14582 209 aaPredicted RBP14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 DNAJC24Q6P3W2 148 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 TRIM69Q86WT6 500 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 TP53BP2Q13625 1128 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 PITPNM3Q9BZ71 974 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 GCOM2Q9BZD3 368 aaPredicted RBP14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 TBC1D4O60343 1298 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 POLR2MP0CAP2 368 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 TMED10P49755 219 aaKnown RBP14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.94□□□□□ -0.027e-12■□□□□ 8.9
CCDC88A-201ENST00000263630 FNDC3AQ9Y2H6 1198 aaKnown RBP14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 DNAJC6O75061 913 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 ZNF189O75820 626 aaPredicted RBP14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 NR1D1P20393 614 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 PRKCQQ04759 706 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 CDR2LQ86X02 465 aaPredicted RBP14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 DTX3LQ8TDB6 740 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 ZNF653Q96CK0 615 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 NACC1Q96RE7 527 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 NSMCE4AQ9NXX6 385 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 PTPN23Q9H3S7 1636 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 EFHBQ8N7U6 833 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 NEK9Q8TD19 979 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 E5RI56 91 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 PODXLO00592 558 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 ADCY3O60266 1144 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 TMPRSS15P98073 1019 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 CNGA2Q16280 664 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 HIBCHQ6NVY1 386 aaPredicted RBP14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 SIX6OS1Q8N1H7 587 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 EXOC4Q96A65 974 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 AATFQ9NY61 560 aaKnown RBP eCLIP14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 FGD5Q6ZNL6 1462 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 LAD1O00515 517 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 SRPK1Q96SB4 655 aaKnown RBP14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 PSTPIP2Q9H939 334 aa14.94□□□□□ -0.02
CCDC88A-201ENST00000263630 TEX28O15482 410 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 NSUN2Q08J23 767 aaKnown RBP eCLIP14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 CNGA3Q16281 694 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 ASCC2Q9H1I8 757 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 CHUKO15111 745 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 CYTH1Q15438 398 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 SURF1Q15526 300 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 CENPPQ6IPU0 288 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 FGD2Q7Z6J4 655 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 BTBD6Q96KE9 485 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 CALN1Q9BXU9 219 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 BICC1Q9H694 974 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 ADA2Q9NZK5 511 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 MTRF1O75570 445 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 ZBED1O96006 694 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 BRD2P25440 801 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 PLTPP55058 493 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 DDB1Q16531 1140 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 ELMOD1Q8N336 334 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 ARPP21Q9UBL0 812 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 EMILIN1Q9Y6C2 1016 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 COPEO14579 308 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 ZSCAN20P17040 1043 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 SERPINB1P30740 379 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 TRAPPC3LQ5T215 181 aa14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 FASTKD5Q7L8L6 764 aaKnown RBP14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 TAB3Q8N5C8 712 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-201ENST00000263630 LARP4BQ92615 738 aaKnown RBP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms