RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ITGB5P18084 799 aa25.25■■□□□ 1.63
CDX1-201ENST00000231656 CNTN2Q02246 1040 aa25.25■■□□□ 1.63
CDX1-201ENST00000231656 WDR78Q5VTH9 848 aa25.25■■□□□ 1.63
CDX1-201ENST00000231656 DNERQ8NFT8 737 aa25.25■■□□□ 1.63
CDX1-201ENST00000231656 CDK5RAP3Q96JB5 506 aa25.25■■□□□ 1.63
CDX1-201ENST00000231656 FAM20AQ96MK3 541 aa25.25■■□□□ 1.63
CDX1-201ENST00000231656 NR3C2P08235 984 aa25.24■■□□□ 1.63
CDX1-201ENST00000231656 MYCLP12524 364 aaPredicted RBP25.24■■□□□ 1.63
CDX1-201ENST00000231656 SFPQP23246 707 aaKnown RBP eCLIP25.24■■□□□ 1.63
CDX1-201ENST00000231656 SETQ01105 290 aaPredicted RBP25.24■■□□□ 1.63
CDX1-201ENST00000231656 TBX2Q13207 712 aaPredicted RBP25.24■■□□□ 1.63
CDX1-201ENST00000231656 TAF1CQ15572 869 aaPredicted RBP25.24■■□□□ 1.63
CDX1-201ENST00000231656 FAM110CQ1W6H9 321 aa25.24■■□□□ 1.63
CDX1-201ENST00000231656 SV2BQ7L1I2 683 aa25.24■■□□□ 1.63
CDX1-201ENST00000231656 RAD54LQ92698 747 aa25.24■■□□□ 1.63
CDX1-201ENST00000231656 CREBZFQ9NS37 354 aa25.24■■□□□ 1.63
CDX1-201ENST00000231656 UBIAD1Q9Y5Z9 338 aa25.24■■□□□ 1.63
CDX1-201ENST00000231656 ADGRA2Q96PE1 1338 aa25.24■■□□□ 1.63
CDX1-201ENST00000231656 COBLO75128 1261 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 APLP1P51693 650 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 KCTD2Q14681 263 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 HYIQ5T013 277 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 XRRA1Q6P2D8 792 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 VSIG10LQ86VR7 867 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 LARP4BQ92615 738 aaKnown RBP25.23■■□□□ 1.63
CDX1-201ENST00000231656 MMP19Q99542 508 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 MAPK8IP1Q9UQF2 711 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 ASTN1O14525 1302 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 POTEB2H3BUK9 544 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 FCER1AP12319 257 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 CCND2P30279 289 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 TM4SF4P48230 202 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 ASIC1P78348 528 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 MCM6Q14566 821 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 PTPN21Q16825 1174 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 NIPA1Q7RTP0 329 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 FAM133AQ8N9E0 248 aa25.23■■□□□ 1.63
CDX1-201ENST00000231656 CCDC47Q96A33 483 aaKnown RBP25.23■■□□□ 1.63
CDX1-201ENST00000231656 RASSF10A6NK89 507 aa25.22■■□□□ 1.63
CDX1-201ENST00000231656 SLC26A4O43511 780 aa25.22■■□□□ 1.63
CDX1-201ENST00000231656 ARP10275 920 aa25.22■■□□□ 1.63
CDX1-201ENST00000231656 BCRP11274 1271 aa25.22■■□□□ 1.63
CDX1-201ENST00000231656 ECM1Q16610 540 aa25.22■■□□□ 1.63
CDX1-201ENST00000231656 TPD52L1Q16890 204 aaPredicted RBP25.22■■□□□ 1.63
CDX1-201ENST00000231656 KCNK18Q7Z418 384 aa25.22■■□□□ 1.63
CDX1-201ENST00000231656 WDR11Q9BZH6 1224 aa25.22■■□□□ 1.63
CDX1-201ENST00000231656 ADD3Q9UEY8 706 aaKnown RBP25.22■■□□□ 1.63
CDX1-201ENST00000231656 CPA4Q9UI42 421 aa25.22■■□□□ 1.63
CDX1-201ENST00000231656 R3HCC1Q9Y3T6 440 aaKnown RBP25.22■■□□□ 1.63
CDX1-201ENST00000231656 PLXNB2O15031 1838 aa25.22■■□□□ 1.63
CDX1-201ENST00000231656 MYMKA6NI61 221 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 DEFB115Q30KQ5 88 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 CNNM4Q6P4Q7 775 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 IWS1Q96ST2 819 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 GTPBP4Q9BZE4 634 aaKnown RBP25.21■■□□□ 1.63
CDX1-201ENST00000231656 JADE2Q9NQC1 790 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 KCNH7Q9NS40 1196 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 EXOC1Q9NV70 894 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 LIMA1Q9UHB6 759 aaKnown RBP25.21■■□□□ 1.63
CDX1-201ENST00000231656 KIAA1217Q5T5P2 1943 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 DNAJC25-GNG10A0A024R161 153 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 SOWAHBA6NEL2 793 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 PGK2P07205 417 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 ALDH5A1P51649 535 aaPredicted RBP25.21■■□□□ 1.63
CDX1-201ENST00000231656 PDE4DQ08499 809 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 DNTTIP2Q5QJE6 756 aaKnown RBP25.21■■□□□ 1.63
CDX1-201ENST00000231656 SPECC1LQ69YQ0 1117 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 CTAGE1Q96RT6 745 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 KCND1Q9NSA2 647 aa25.21■■□□□ 1.63
CDX1-201ENST00000231656 KDM3AQ9Y4C1 1321 aa25.2■■□□□ 1.62
CDX1-201ENST00000231656 SPIRE1Q08AE8 756 aa25.2■■□□□ 1.62
CDX1-201ENST00000231656 NOGQ13253 232 aa25.2■■□□□ 1.62
CDX1-201ENST00000231656 STIM1Q13586 685 aa25.2■■□□□ 1.62
CDX1-201ENST00000231656 SLC5A5Q92911 643 aa25.2■■□□□ 1.62
CDX1-201ENST00000231656 TERF1P54274 439 aa25.19■■□□□ 1.62
CDX1-201ENST00000231656 MTMR1Q13613 665 aa25.19■■□□□ 1.62
CDX1-201ENST00000231656 COBLL1Q53SF7 1204 aa25.19■■□□□ 1.62
CDX1-201ENST00000231656 DHTKD1Q96HY7 919 aaPredicted RBP25.19■■□□□ 1.62
CDX1-201ENST00000231656 ZNF577Q9BSK1 485 aa25.19■■□□□ 1.62
CDX1-201ENST00000231656 PVALEFA0A1B0GWK0 134 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 TRIM49BA6NDI0 452 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 LRRC10BA6NIK2 292 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 IPO5O00410 1097 aaKnown RBP25.18■■□□□ 1.62
CDX1-201ENST00000231656 PSMA7O14818 248 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 TEX33O43247 280 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 TLR2O60603 784 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 PSMD10O75832 226 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 CCT6AP40227 531 aaKnown RBP25.18■■□□□ 1.62
CDX1-201ENST00000231656 PBX1P40424 430 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 PMS1P54277 932 aaKnown RBP25.18■■□□□ 1.62
CDX1-201ENST00000231656 SPAG1Q07617 926 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 STK4Q13043 487 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 UNC13DQ70J99 1090 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 CAPNS2Q96L46 248 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 TMX1Q9H3N1 280 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 ZFYVE28Q9HCC9 887 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 VAV3Q9UKW4 847 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 PCNTO95613 3336 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 STAM2O75886 525 aa25.18■■□□□ 1.62
CDX1-201ENST00000231656 KCNJ6P48051 423 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms