RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 ATP9AO75110 1047 aa29.29■■■□□ 2.28
TRIM28-204ENST00000594806 FAM86B2P0C5J1 330 aa29.29■■■□□ 2.28
TRIM28-204ENST00000594806 HSDL1Q3SXM5 330 aa29.29■■■□□ 2.28
TRIM28-204ENST00000594806 DOCK5Q9H7D0 1870 aa29.29■■■□□ 2.28
TRIM28-204ENST00000594806 CDK7P50613 346 aa29.28■■■□□ 2.28
TRIM28-204ENST00000594806 ITGA7Q13683 1181 aa29.28■■■□□ 2.28
TRIM28-204ENST00000594806 ANKRD33Q7Z3H0 272 aa29.28■■■□□ 2.28
TRIM28-204ENST00000594806 SLC43A3Q8NBI5 491 aa29.28■■■□□ 2.28
TRIM28-204ENST00000594806 FBXO18Q8NFZ0 1043 aa29.28■■■□□ 2.28
TRIM28-204ENST00000594806 NAP1L4Q99733 375 aaKnown RBP29.28■■■□□ 2.28
TRIM28-204ENST00000594806 SDF4Q9BRK5 362 aa29.28■■■□□ 2.28
TRIM28-204ENST00000594806 KATNAL1Q9BW62 490 aa29.28■■■□□ 2.28
TRIM28-204ENST00000594806 AGO4Q9HCK5 861 aaKnown RBP29.28■■■□□ 2.28
TRIM28-204ENST00000594806 CYP3A7-CYP3A51PA0A087WV96 503 aa29.27■■■□□ 2.28
TRIM28-204ENST00000594806 ARP10275 920 aa29.27■■■□□ 2.28
TRIM28-204ENST00000594806 CYP3A7P24462 503 aa29.27■■■□□ 2.28
TRIM28-204ENST00000594806 OXER1Q8TDS5 423 aa29.27■■■□□ 2.28
TRIM28-204ENST00000594806 ATP11BQ9Y2G3 1177 aa29.27■■■□□ 2.28
TRIM28-204ENST00000594806 CUL4AQ13619 759 aa29.26■■■□□ 2.27
TRIM28-204ENST00000594806 TRIM60Q495X7 471 aa29.26■■■□□ 2.27
TRIM28-204ENST00000594806 DIS3L2Q8IYB7 885 aaKnown RBP29.26■■■□□ 2.27
TRIM28-204ENST00000594806 TNFRSF25Q93038 417 aa29.26■■■□□ 2.27
TRIM28-204ENST00000594806 SNX21Q969T3 373 aa29.26■■■□□ 2.27
TRIM28-204ENST00000594806 GPR20Q99678 358 aa29.26■■■□□ 2.27
TRIM28-204ENST00000594806 DCDC2CA8MYV0 355 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 EDIL3O43854 480 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 PTPN11Q06124 597 aaPredicted RBP29.25■■■□□ 2.27
TRIM28-204ENST00000594806 INF2Q27J81 1249 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 Q4G0T1 1027 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 PRR16Q569H4 304 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 NFRKBQ6P4R8 1299 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 PIK3AP1Q6ZUJ8 805 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 NEK8Q86SG6 692 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 C7orf61Q8IZ16 206 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 BCAS3Q9H6U6 928 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 JPH1Q9HDC5 661 aaPredicted RBP29.25■■■□□ 2.27
TRIM28-204ENST00000594806 TBC1D22BQ9NU19 505 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 SLC9A2Q9UBY0 812 aa29.25■■■□□ 2.27
TRIM28-204ENST00000594806 BTBD18B2RXH4 712 aa29.24■■■□□ 2.27
TRIM28-204ENST00000594806 IPO5O00410 1097 aaKnown RBP29.24■■■□□ 2.27
TRIM28-204ENST00000594806 GCFC2P16383 781 aaKnown RBP29.24■■■□□ 2.27
TRIM28-204ENST00000594806 TLE2Q04725 743 aa29.24■■■□□ 2.27
TRIM28-204ENST00000594806 SEPT1Q8WYJ6 367 aa29.24■■■□□ 2.27
TRIM28-204ENST00000594806 MBOAT7Q96N66 472 aa29.24■■■□□ 2.27
TRIM28-204ENST00000594806 ZNF577Q9BSK1 485 aa29.24■■■□□ 2.27
TRIM28-204ENST00000594806 SMC3Q9UQE7 1217 aa29.24■■■□□ 2.27
TRIM28-204ENST00000594806 GRIN2DO15399 1336 aa29.23■■■□□ 2.27
TRIM28-204ENST00000594806 TLR3O15455 904 aaKnown RBP29.23■■■□□ 2.27
TRIM28-204ENST00000594806 SORBS3O60504 671 aa29.23■■■□□ 2.27
TRIM28-204ENST00000594806 F2P00734 622 aa29.23■■■□□ 2.27
TRIM28-204ENST00000594806 FOSBP53539 338 aa29.23■■■□□ 2.27
TRIM28-204ENST00000594806 NR5A1Q13285 461 aa29.23■■■□□ 2.27
TRIM28-204ENST00000594806 PPP4R3AQ6IN85 833 aa29.23■■■□□ 2.27
TRIM28-204ENST00000594806 LENG9Q96B70 501 aa29.23■■■□□ 2.27
TRIM28-204ENST00000594806 FOXP1Q9H334 677 aaPredicted RBP29.23■■■□□ 2.27
TRIM28-204ENST00000594806 PKD2L1Q9P0L9 805 aa29.23■■■□□ 2.27
TRIM28-204ENST00000594806 TNRC18O15417 2968 aaPredicted RBP29.22■■■□□ 2.27
TRIM28-204ENST00000594806 PSMC6P62333 389 aa29.22■■■□□ 2.27
TRIM28-204ENST00000594806 KAT2BQ92831 832 aa29.22■■■□□ 2.27
TRIM28-204ENST00000594806 PRKAG2Q9UGJ0 569 aa29.22■■■□□ 2.27
TRIM28-204ENST00000594806 K7ELQ4 463 aaPredicted RBP29.21■■■□□ 2.27
TRIM28-204ENST00000594806 PQBP1O60828 265 aaKnown RBP29.21■■■□□ 2.27
TRIM28-204ENST00000594806 LGALS2P05162 132 aa29.21■■■□□ 2.27
TRIM28-204ENST00000594806 GJB2P29033 226 aa29.21■■■□□ 2.27
TRIM28-204ENST00000594806 ITGB3BPQ13352 177 aaPredicted RBP29.21■■■□□ 2.27
TRIM28-204ENST00000594806 LETM2Q2VYF4 491 aa29.21■■■□□ 2.27
TRIM28-204ENST00000594806 NBPF20Q3BBV1 942 aa29.21■■■□□ 2.27
TRIM28-204ENST00000594806 SESTD1Q86VW0 696 aa29.21■■■□□ 2.27
TRIM28-204ENST00000594806 INTS4Q96HW7 963 aaKnown RBP29.21■■■□□ 2.27
TRIM28-204ENST00000594806 C16orf70Q9BSU1 422 aa29.21■■■□□ 2.27
TRIM28-204ENST00000594806 HAS3O00219 553 aa29.2■■■□□ 2.26
TRIM28-204ENST00000594806 CLTBP09497 229 aa29.2■■■□□ 2.26
TRIM28-204ENST00000594806 GUCY1B3Q02153 619 aa29.2■■■□□ 2.26
TRIM28-204ENST00000594806 FAM126BQ8IXS8 530 aa29.2■■■□□ 2.26
TRIM28-204ENST00000594806 RIT2Q99578 217 aa29.2■■■□□ 2.26
TRIM28-204ENST00000594806 TCEAL9Q9UHQ7 104 aa29.2■■■□□ 2.26
TRIM28-204ENST00000594806 ZNF215Q9UL58 517 aaPredicted RBP29.2■■■□□ 2.26
TRIM28-204ENST00000594806 H3BRB1 525 aa29.19■■■□□ 2.26
TRIM28-204ENST00000594806 DHX15O43143 795 aaKnown RBP29.19■■■□□ 2.26
TRIM28-204ENST00000594806 SUPT20HL2P0C7V6 817 aa29.19■■■□□ 2.26
TRIM28-204ENST00000594806 TCF7P36402 384 aaPredicted RBP29.19■■■□□ 2.26
TRIM28-204ENST00000594806 PSEN2P49810 448 aa29.19■■■□□ 2.26
TRIM28-204ENST00000594806 SP4Q02446 784 aa29.19■■■□□ 2.26
TRIM28-204ENST00000594806 MFSD10Q14728 455 aa29.19■■■□□ 2.26
TRIM28-204ENST00000594806 PRPF38BQ5VTL8 546 aaKnown RBP29.19■■■□□ 2.26
TRIM28-204ENST00000594806 TUT1Q9H6E5 874 aaKnown RBP29.19■■■□□ 2.26
TRIM28-204ENST00000594806 DDX25Q9UHL0 483 aaKnown RBP29.19■■■□□ 2.26
TRIM28-204ENST00000594806 GSTTP1A0A1W2PQM5 241 aa29.18■■■□□ 2.26
TRIM28-204ENST00000594806 MSH4O15457 936 aa29.18■■■□□ 2.26
TRIM28-204ENST00000594806 TDP2O95551 362 aa29.18■■■□□ 2.26
TRIM28-204ENST00000594806 ZNF286BP0CG31 522 aa29.18■■■□□ 2.26
TRIM28-204ENST00000594806 KRT76Q01546 638 aa29.18■■■□□ 2.26
TRIM28-204ENST00000594806 GNL2Q13823 731 aaKnown RBP29.18■■■□□ 2.26
TRIM28-204ENST00000594806 EARS2Q5JPH6 523 aaKnown RBP29.18■■■□□ 2.26
TRIM28-204ENST00000594806 ZNF746Q6NUN9 644 aaPredicted RBP29.18■■■□□ 2.26
TRIM28-204ENST00000594806 H0YGN5 161 aa29.17■■■□□ 2.26
TRIM28-204ENST00000594806 ATG7O95352 703 aa29.17■■■□□ 2.26
TRIM28-204ENST00000594806 CD4P01730 458 aa29.17■■■□□ 2.26
TRIM28-204ENST00000594806 ACTR2P61160 394 aa29.17■■■□□ 2.26
TRIM28-204ENST00000594806 FAAP100Q0VG06 881 aa29.17■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms