RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 LOXHD1Q8IVV2 1947 aa34.36■■■■□ 3.09
CTCF-203ENST00000566078 KDM3AQ9Y4C1 1321 aa34.35■■■■□ 3.09
CTCF-203ENST00000566078 DDX39AO00148 427 aaKnown RBP34.35■■■■□ 3.09
CTCF-203ENST00000566078 FOXN1O15353 648 aa34.35■■■■□ 3.09
CTCF-203ENST00000566078 CHMP2AO43633 222 aa34.35■■■■□ 3.09
CTCF-203ENST00000566078 CCT6AP40227 531 aaKnown RBP34.35■■■■□ 3.09
CTCF-203ENST00000566078 SEMA3FQ13275 785 aa34.35■■■■□ 3.09
CTCF-203ENST00000566078 GRB10Q13322 594 aa34.35■■■■□ 3.09
CTCF-203ENST00000566078 PNOCQ13519 176 aa34.35■■■■□ 3.09
CTCF-203ENST00000566078 HAUS3Q68CZ6 603 aa34.35■■■■□ 3.09
CTCF-203ENST00000566078 GRAMD1CQ8IYS0 662 aa34.35■■■■□ 3.09
CTCF-203ENST00000566078 PNMA5Q96PV4 448 aa34.35■■■■□ 3.09
CTCF-203ENST00000566078 UNC45AQ9H3U1 944 aa34.35■■■■□ 3.09
CTCF-203ENST00000566078 CA12O43570 354 aa34.34■■■■□ 3.09
CTCF-203ENST00000566078 GRB14Q14449 540 aa34.34■■■■□ 3.09
CTCF-203ENST00000566078 NAALADL2Q58DX5 795 aa34.34■■■■□ 3.09
CTCF-203ENST00000566078 CDHR1Q96JP9 859 aa34.34■■■■□ 3.09
CTCF-203ENST00000566078 STK24Q9Y6E0 443 aa34.34■■■■□ 3.09
CTCF-203ENST00000566078 ZSWIM8A7E2V4 1837 aa34.34■■■■□ 3.09
CTCF-203ENST00000566078 MAFGO15525 162 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 ALDH1A1P00352 501 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 GSE1Q14687 1217 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 POSTNQ15063 836 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 TBC1D22BQ9NU19 505 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 EML1O00423 815 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 DHX15O43143 795 aaKnown RBP34.33■■■■□ 3.09
CTCF-203ENST00000566078 SLC26A4O43511 780 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 ATP9AO75110 1047 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 COBLO75128 1261 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 ZNF792Q3KQV3 632 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 LRRC15Q8TF66 581 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 PAGE5Q96GU1 130 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 KIAA1468Q9P260 1216 aa34.33■■■■□ 3.09
CTCF-203ENST00000566078 PRR29P0C7W0 189 aa34.32■■■■□ 3.08
CTCF-203ENST00000566078 AFMP43652 599 aa34.32■■■■□ 3.08
CTCF-203ENST00000566078 MDM2Q00987 491 aaPredicted RBP34.32■■■■□ 3.08
CTCF-203ENST00000566078 TMEM119Q4V9L6 283 aa34.32■■■■□ 3.08
CTCF-203ENST00000566078 REM2Q8IYK8 340 aaPredicted RBP34.32■■■■□ 3.08
CTCF-203ENST00000566078 LOC102724159A0A0B4J2E5 919 aa34.31■■■■□ 3.08
CTCF-203ENST00000566078 ECM2O94769 699 aaPredicted RBP34.31■■■■□ 3.08
CTCF-203ENST00000566078 PWP2Q15269 919 aaKnown RBP34.31■■■■□ 3.08
CTCF-203ENST00000566078 HYIQ5T013 277 aa34.31■■■■□ 3.08
CTCF-203ENST00000566078 B3GNT9Q6UX72 402 aa34.31■■■■□ 3.08
CTCF-203ENST00000566078 SH3RF1Q7Z6J0 888 aa34.31■■■■□ 3.08
CTCF-203ENST00000566078 FUCA2Q9BTY2 467 aa34.31■■■■□ 3.08
CTCF-203ENST00000566078 CUEDC2Q9H467 287 aa34.31■■■■□ 3.08
CTCF-203ENST00000566078 SPATA31C2B4DYI2 1134 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 MED24O75448 989 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 ECM1Q16610 540 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 SASS6Q6UVJ0 657 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 SEPT14Q6ZU15 432 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 NT5C3AQ9H0P0 336 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 THSD7BQ9C0I4 1608 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 POTEB3A0JP26 581 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 SLC15A5A6NIM6 579 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 KCNA2P16389 499 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 ICAM3P32942 547 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 POTEBQ6S5H4 581 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 DPP9Q86TI2 863 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 MORC4Q8TE76 937 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 STAMQ92783 540 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 EIF2AK1Q9BQI3 630 aaKnown RBP34.3■■■■□ 3.08
CTCF-203ENST00000566078 TSPY26PQ9H489 355 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 STK17AQ9UEE5 414 aa34.3■■■■□ 3.08
CTCF-203ENST00000566078 ASB14A6NK59 587 aa34.29■■■■□ 3.08
CTCF-203ENST00000566078 CCDC192P0DO97 292 aa34.29■■■■□ 3.08
CTCF-203ENST00000566078 GAS2L3Q86XJ1 694 aa34.29■■■■□ 3.08
CTCF-203ENST00000566078 MAGEF1Q9HAY2 307 aa34.29■■■■□ 3.08
CTCF-203ENST00000566078 RPA1P27694 616 aa34.28■■■■□ 3.08
CTCF-203ENST00000566078 TYRO3Q06418 890 aa34.28■■■■□ 3.08
CTCF-203ENST00000566078 EEPD1Q7L9B9 569 aa34.28■■■■□ 3.08
CTCF-203ENST00000566078 TCEAL9Q9UHQ7 104 aa34.28■■■■□ 3.08
CTCF-203ENST00000566078 KIAA1024Q9UPX6 916 aa34.28■■■■□ 3.08
CTCF-203ENST00000566078 MIER3Q7Z3K6 550 aa34.27■■■■□ 3.08
CTCF-203ENST00000566078 CATSPER3Q86XQ3 398 aa34.27■■■■□ 3.08
CTCF-203ENST00000566078 POLR3CQ9BUI4 534 aaPredicted RBP34.27■■■■□ 3.08
CTCF-203ENST00000566078 BLOC1S4Q9NUP1 217 aa34.27■■■■□ 3.08
CTCF-203ENST00000566078 MYH9P35579 1960 aaKnown RBP34.27■■■■□ 3.08
CTCF-203ENST00000566078 CYP4A11Q02928 519 aa34.26■■■■□ 3.08
CTCF-203ENST00000566078 MTRQ99707 1265 aa34.26■■■■□ 3.08
CTCF-203ENST00000566078 NFASCO94856 1347 aa34.26■■■■□ 3.08
CTCF-203ENST00000566078 POTEFA5A3E0 1075 aa34.26■■■■□ 3.07
CTCF-203ENST00000566078 SPATA31C1P0DKV0 1188 aa34.26■■■■□ 3.07
CTCF-203ENST00000566078 KRT76Q01546 638 aa34.26■■■■□ 3.07
CTCF-203ENST00000566078 EPHA7Q15375 998 aa34.26■■■■□ 3.07
CTCF-203ENST00000566078 POTEGQ6S5H5 508 aa34.26■■■■□ 3.07
CTCF-203ENST00000566078 ARMCX2Q7L311 632 aa34.26■■■■□ 3.07
CTCF-203ENST00000566078 KCNK18Q7Z418 384 aa34.26■■■■□ 3.07
CTCF-203ENST00000566078 ZNF467Q7Z7K2 595 aaPredicted RBP34.26■■■■□ 3.07
CTCF-203ENST00000566078 RAD54LQ92698 747 aa34.26■■■■□ 3.07
CTCF-203ENST00000566078 DYDC2Q96IM9 177 aa34.26■■■■□ 3.07
CTCF-203ENST00000566078 KBTBD4Q9NVX7 518 aa34.26■■■■□ 3.07
CTCF-203ENST00000566078 TUBE1Q9UJT0 475 aa34.26■■■■□ 3.07
CTCF-203ENST00000566078 CASP1P29466 404 aa34.25■■■■□ 3.07
CTCF-203ENST00000566078 HTRA3P83110 453 aa34.25■■■■□ 3.07
CTCF-203ENST00000566078 MORN1Q5T089 497 aa34.25■■■■□ 3.07
CTCF-203ENST00000566078 LARP4BQ92615 738 aaKnown RBP34.25■■■■□ 3.07
CTCF-203ENST00000566078 TUFT1Q9NNX1 390 aa34.25■■■■□ 3.07
CTCF-203ENST00000566078 RGL1Q9NZL6 768 aa34.25■■■■□ 3.07
CTCF-203ENST00000566078 PCDHA5Q9Y5H7 936 aa34.25■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms