RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SLC37A4O43826 429 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 CDKL5O76039 1030 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 FOSP01100 380 aaPredicted RBP10.52□□□□□ -0.73
VPS35-206ENST00000565228 CD4P01730 458 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 MMP1P03956 469 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 MYL3P08590 195 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 ZNF200P98182 395 aaPredicted RBP10.52□□□□□ -0.73
VPS35-206ENST00000565228 TLE2Q04725 743 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 FAAP100Q0VG06 881 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 CUL4AQ13619 759 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 C1orf53Q5VUE5 145 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 XRRA1Q6P2D8 792 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 FAM126BQ8IXS8 530 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 CCDC148Q8NFR7 591 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 PPTC7Q8NI37 304 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 DPF3Q92784 378 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 WNT8BQ93098 351 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 GPRASP2Q96D09 838 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 LLPHQ9BRT6 129 aaKnown RBP10.52□□□□□ -0.73
VPS35-206ENST00000565228 AP5M1Q9H0R1 490 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 PRO3102Q9H379 93 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 STARD7Q9NQZ5 370 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 PDLIM7Q9NR12 457 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 TET1Q8NFU7 2136 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 UMODL1Q5DID0 1318 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 MSH4O15457 936 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 B4GALT4O60513 344 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 STAM2O75886 525 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 TGFB3P10600 412 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 CAPN2P17655 700 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 GNA11P29992 359 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 SP4Q02446 784 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 MTMR1Q13613 665 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 ITGA7Q13683 1181 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 NBPF20Q3BBV1 942 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 CPLX2Q6PUV4 134 aaKnown RBP10.51□□□□□ -0.73
VPS35-206ENST00000565228 B3GNT9Q6UX72 402 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 PIK3AP1Q6ZUJ8 805 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 PLA2G4DQ86XP0 818 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 DHX37Q8IY37 1157 aaKnown RBP10.51□□□□□ -0.73
VPS35-206ENST00000565228 ZBTB10Q96DT7 871 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 SPATA33Q96N06 139 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 SENP7Q9BQF6 1050 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 OSBPL7Q9BZF2 842 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 TRPV6Q9H1D0 765 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 TRMT13Q9NUP7 481 aaKnown RBP10.51□□□□□ -0.73
VPS35-206ENST00000565228 ATP11BQ9Y2G3 1177 aa10.51□□□□□ -0.73
VPS35-206ENST00000565228 EYSQ5T1H1 3165 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 CYP3A7-CYP3A51PA0A087WV96 503 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 B4DLN1 442 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 ARVCFO00192 962 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 ST18O60284 1047 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 PQBP1O60828 265 aaKnown RBP10.5□□□□□ -0.73
VPS35-206ENST00000565228 LGALS2P05162 132 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 ATP4AP20648 1035 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 CYP3A7P24462 503 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 TOB1P50616 345 aaPredicted RBP10.5□□□□□ -0.73
VPS35-206ENST00000565228 EPHB4P54760 987 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 LAMC2Q13753 1193 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 NBR1Q14596 966 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 PRR16Q569H4 304 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 METTL7BQ6UX53 244 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 ANKRD33Q7Z3H0 272 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 DIS3L2Q8IYB7 885 aaKnown RBP10.5□□□□□ -0.73
VPS35-206ENST00000565228 PCSK9Q8NBP7 692 aaKnown RBP10.5□□□□□ -0.73
VPS35-206ENST00000565228 FBXO18Q8NFZ0 1043 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 ETNPPLQ8TBG4 499 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 CCDC12Q8WUD4 166 aaPredicted RBP10.5□□□□□ -0.73
VPS35-206ENST00000565228 DHX38Q92620 1227 aaKnown RBP10.5□□□□□ -0.73
VPS35-206ENST00000565228 HAS1Q92839 578 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 MPHOSPH6Q99547 160 aaKnown RBP10.5□□□□□ -0.73
VPS35-206ENST00000565228 MTG1Q9BT17 334 aaPredicted RBP10.5□□□□□ -0.73
VPS35-206ENST00000565228 GLT8D2Q9H1C3 349 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 UPF2Q9HAU5 1272 aaKnown RBP10.5□□□□□ -0.73
VPS35-206ENST00000565228 TBX21Q9UL17 535 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 ELP1O95163 1332 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 MUC3AQ02505 3323 aa10.5□□□□□ -0.73
VPS35-206ENST00000565228 A0A0U1RQG5 324 aaPredicted RBP10.49□□□□□ -0.73
VPS35-206ENST00000565228 DDX39AO00148 427 aaKnown RBP10.49□□□□□ -0.73
VPS35-206ENST00000565228 DLL1O00548 723 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 EVI5O60447 810 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 ATG7O95352 703 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 F2P00734 622 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 GJB2P29033 226 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 HOXC8P31273 242 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 PSEN2P49810 448 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 CPT1AP50416 773 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 GPNMBQ14956 572 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 GNPTABQ3T906 1256 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 GDF6Q6KF10 455 aaPredicted RBP10.49□□□□□ -0.73
VPS35-206ENST00000565228 NIPA1Q7RTP0 329 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 NLRX1Q86UT6 975 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 TEX2Q8IWB9 1127 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 GLT1D1Q96MS3 346 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 HTATIP2Q9BUP3 242 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 TMEM60Q9H2L4 133 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 RNPEPQ9H4A4 650 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 MLXIPQ9HAP2 919 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 SPC25Q9HBM1 224 aa10.49□□□□□ -0.73
VPS35-206ENST00000565228 HDAC6Q9UBN7 1215 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms