RNA–Protein interactions for RNA: ENST00000563207.1

USB1-208, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 5

Gene USB1, Length 464 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-208ENST00000563207 GGPS1O95749 300 aa17.99■□□□□ 0.47
USB1-208ENST00000563207 UBA1P22314 1058 aaKnown RBP17.99■□□□□ 0.47
USB1-208ENST00000563207 CDC27P30260 824 aa17.99■□□□□ 0.47
USB1-208ENST00000563207 ADD1P35611 737 aaKnown RBP17.99■□□□□ 0.47
USB1-208ENST00000563207 MCM2P49736 904 aa17.99■□□□□ 0.47
USB1-208ENST00000563207 PTPN11Q06124 597 aaPredicted RBP17.99■□□□□ 0.47
USB1-208ENST00000563207 LAMC2Q13753 1193 aa17.99■□□□□ 0.47
USB1-208ENST00000563207 DGKDQ16760 1214 aa17.99■□□□□ 0.47
USB1-208ENST00000563207 CELF3Q5SZQ8 465 aaKnown RBP17.99■□□□□ 0.47
USB1-208ENST00000563207 USP17L6PQ6QN14 398 aa17.99■□□□□ 0.47
USB1-208ENST00000563207 EMID1Q96A84 441 aaPredicted RBP17.99■□□□□ 0.47
USB1-208ENST00000563207 SLKQ9H2G2 1235 aaPredicted RBP17.99■□□□□ 0.47
USB1-208ENST00000563207 RTEL1Q9NZ71 1219 aa17.99■□□□□ 0.47
USB1-208ENST00000563207 TPCN1Q9ULQ1 816 aa17.99■□□□□ 0.47
USB1-208ENST00000563207 LIMCH1Q9UPQ0 1083 aa17.99■□□□□ 0.47
USB1-208ENST00000563207 NOD1Q9Y239 953 aa17.99■□□□□ 0.47
USB1-208ENST00000563207 HAS3O00219 553 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 RFXAPO00287 272 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 PITPNM1O00562 1244 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 ATP2A2P16615 1042 aaKnown RBP17.98■□□□□ 0.47
USB1-208ENST00000563207 SEMA3FQ13275 785 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 MFSD10Q14728 455 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 RAB30Q15771 203 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 CCDC85BQ15834 202 aaPredicted RBP17.98■□□□□ 0.47
USB1-208ENST00000563207 KIAA0753Q2KHM9 967 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 SPRED2Q7Z698 418 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 SESTD1Q86VW0 696 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 RETREG2Q8NC44 543 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 PPTC7Q8NI37 304 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 ZSCAN31Q96LW9 406 aaPredicted RBP17.98■□□□□ 0.47
USB1-208ENST00000563207 FTOQ9C0B1 505 aaKnown RBP eCLIP17.98■□□□□ 0.47
USB1-208ENST00000563207 CERS4Q9HA82 394 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 GTF2IRD1Q9UHL9 959 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 MYO9BQ13459 2157 aa17.98■□□□□ 0.47
USB1-208ENST00000563207 CPLX1O14810 134 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 CDKL5O76039 1030 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 F2P00734 622 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 IFNAR1P17181 557 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 CCND2P30279 289 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 CCT2P78371 535 aaKnown RBP17.97■□□□□ 0.47
USB1-208ENST00000563207 FUT2Q10981 343 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 CCDC82Q8N4S0 544 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 SAMD3Q8N6K7 520 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 SPATA33Q96N06 139 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 MTIF3Q9H2K0 278 aaKnown RBP17.97■□□□□ 0.47
USB1-208ENST00000563207 SLC28A3Q9HAS3 691 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 MAP3K20Q9NYL2 800 aaKnown RBP17.97■□□□□ 0.47
USB1-208ENST00000563207 TRANK1O15050 2925 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 CNTNAP5Q8WYK1 1306 aa17.97■□□□□ 0.47
USB1-208ENST00000563207 hCG_1984214I3L0E3 225 aa17.96■□□□□ 0.47
USB1-208ENST00000563207 NBNO60934 754 aa17.96■□□□□ 0.47
USB1-208ENST00000563207 HOXD8P13378 290 aaPredicted RBP17.96■□□□□ 0.47
USB1-208ENST00000563207 IGFBP4P22692 258 aa17.96■□□□□ 0.47
USB1-208ENST00000563207 BFSP2Q13515 415 aa17.96■□□□□ 0.47
USB1-208ENST00000563207 NTRK3Q16288 839 aa17.96■□□□□ 0.47
USB1-208ENST00000563207 TRIM71Q2Q1W2 868 aaKnown RBP17.96■□□□□ 0.47
USB1-208ENST00000563207 TRAF7Q6Q0C0 670 aa17.96■□□□□ 0.47
USB1-208ENST00000563207 ZNF713Q8N859 430 aaPredicted RBP17.96■□□□□ 0.47
USB1-208ENST00000563207 C7orf31Q8N865 590 aa17.96■□□□□ 0.47
USB1-208ENST00000563207 LARP6Q9BRS8 491 aaKnown RBP17.96■□□□□ 0.47
USB1-208ENST00000563207 C16orf70Q9BSU1 422 aa17.96■□□□□ 0.47
USB1-208ENST00000563207 RNF26Q9BY78 433 aaPredicted RBP17.96■□□□□ 0.47
USB1-208ENST00000563207 OSBPL7Q9BZF2 842 aa17.96■□□□□ 0.47
USB1-208ENST00000563207 SH2B1Q9NRF2 756 aaPredicted RBP17.96■□□□□ 0.47
USB1-208ENST00000563207 PCDHA11Q9Y5I1 949 aa17.96■□□□□ 0.47
USB1-208ENST00000563207 EPOPA6NHQ4 379 aa17.95■□□□□ 0.46
USB1-208ENST00000563207 MEIS2O14770 477 aa17.95■□□□□ 0.46
USB1-208ENST00000563207 PRPF3O43395 683 aaKnown RBP17.95■□□□□ 0.46
USB1-208ENST00000563207 CA3P07451 260 aa17.95■□□□□ 0.46
USB1-208ENST00000563207 CKBP12277 381 aa17.95■□□□□ 0.46
USB1-208ENST00000563207 AKAP17AQ02040 695 aaKnown RBP17.95■□□□□ 0.46
USB1-208ENST00000563207 STK3Q13188 491 aa17.95■□□□□ 0.46
USB1-208ENST00000563207 MBTPS1Q14703 1052 aa17.95■□□□□ 0.46
USB1-208ENST00000563207 ME3Q16798 604 aa17.95■□□□□ 0.46
USB1-208ENST00000563207 PPP2R2DQ66LE6 453 aa17.95■□□□□ 0.46
USB1-208ENST00000563207 TEX2Q8IWB9 1127 aa17.95■□□□□ 0.46
USB1-208ENST00000563207 TRIM22Q8IYM9 498 aa17.95■□□□□ 0.46
USB1-208ENST00000563207 GAS2L1Q99501 681 aaPredicted RBP17.95■□□□□ 0.46
USB1-208ENST00000563207 FRMPD4Q14CM0 1322 aa17.95■□□□□ 0.46
USB1-208ENST00000563207 PPFIA4O75335 1185 aa17.94■□□□□ 0.46
USB1-208ENST00000563207 PFKMP08237 780 aa17.94■□□□□ 0.46
USB1-208ENST00000563207 SELPP16109 830 aa17.94■□□□□ 0.46
USB1-208ENST00000563207 RFC2P35250 354 aa17.94■□□□□ 0.46
USB1-208ENST00000563207 SCRN1Q12765 414 aa17.94■□□□□ 0.46
USB1-208ENST00000563207 ZNF618Q5T7W0 954 aa17.94■□□□□ 0.46
USB1-208ENST00000563207 LRRC8DQ7L1W4 858 aa17.94■□□□□ 0.46
USB1-208ENST00000563207 GTF3C6Q969F1 213 aa17.94■□□□□ 0.46
USB1-208ENST00000563207 MLXIPQ9HAP2 919 aa17.94■□□□□ 0.46
USB1-208ENST00000563207 NCOA5Q9HCD5 579 aaKnown RBP17.94■□□□□ 0.46
USB1-208ENST00000563207 V9GY48 417 aaPredicted RBP17.94■□□□□ 0.46
USB1-208ENST00000563207 XIRP2A4UGR9 3374 aa17.94■□□□□ 0.46
USB1-208ENST00000563207 CUL9Q8IWT3 2517 aa17.94■□□□□ 0.46
USB1-208ENST00000563207 LCHNA4D1U4 455 aa17.93■□□□□ 0.46
USB1-208ENST00000563207 SPATA31C2B4DYI2 1134 aa17.93■□□□□ 0.46
USB1-208ENST00000563207 DEFB103AP81534 67 aa17.93■□□□□ 0.46
USB1-208ENST00000563207 SSRP1Q08945 709 aaKnown RBP17.93■□□□□ 0.46
USB1-208ENST00000563207 UBE2SQ16763 222 aa17.93■□□□□ 0.46
USB1-208ENST00000563207 KRT40Q6A162 431 aa17.93■□□□□ 0.46
USB1-208ENST00000563207 CYFIP1Q7L576 1253 aa17.93■□□□□ 0.46
USB1-208ENST00000563207 TRIM50Q86XT4 487 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms