RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15□□□□□ -0.016e-6■■■□□ 19.1
SF3B3-202ENST00000562722 CYFIP1Q7L576 1253 aa15□□□□□ -0.01
SF3B3-202ENST00000562722 DBF4BQ8NFT6 615 aa15□□□□□ -0.01
SF3B3-202ENST00000562722 CTCFLQ8NI51 663 aaPredicted RBP15□□□□□ -0.01
SF3B3-202ENST00000562722 SMARCC2Q8TAQ2 1214 aa15□□□□□ -0.01
SF3B3-202ENST00000562722 CUL5Q93034 780 aa15□□□□□ -0.01
SF3B3-202ENST00000562722 SUGCTQ9HAC7 445 aa15□□□□□ -0.01
SF3B3-202ENST00000562722 RTEL1Q9NZ71 1219 aa15□□□□□ -0.01
SF3B3-202ENST00000562722 LMCD1Q9NZU5 365 aa15□□□□□ -0.01
SF3B3-202ENST00000562722 INSL6Q9Y581 213 aa15□□□□□ -0.01
SF3B3-202ENST00000562722 TREHO43280 583 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 FIBPO43427 364 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 STAM2O75886 525 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 GNAT1P11488 350 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 TROAPQ12815 778 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 UTP14CQ5TAP6 766 aaKnown RBP14.99□□□□□ -0.01
SF3B3-202ENST00000562722 FBXO22Q8NEZ5 403 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 SEPT8Q92599 483 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 RRP36Q96EU6 259 aaKnown RBP14.99□□□□□ -0.01
SF3B3-202ENST00000562722 USP26Q9BXU7 913 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 BCAS3Q9H6U6 928 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 SEC63Q9UGP8 760 aaKnown RBP14.99□□□□□ -0.01
SF3B3-202ENST00000562722 ZNF215Q9UL58 517 aaPredicted RBP14.99□□□□□ -0.01
SF3B3-202ENST00000562722 TAF6LQ9Y6J9 622 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 PTPRSQ13332 1948 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 XIRP2A4UGR9 3374 aa14.99□□□□□ -0.01
SF3B3-202ENST00000562722 MYH7BA7E2Y1 1941 aa14.98□□□□□ -0.01
SF3B3-202ENST00000562722 SPATA31C2B4DYI2 1134 aa14.98□□□□□ -0.01
SF3B3-202ENST00000562722 MRPS9P82933 396 aaKnown RBP14.98□□□□□ -0.01
SF3B3-202ENST00000562722 METTL7BQ6UX53 244 aa14.98□□□□□ -0.01
SF3B3-202ENST00000562722 NFXL1Q6ZNB6 911 aa14.98□□□□□ -0.01
SF3B3-202ENST00000562722 TRIM50Q86XT4 487 aa14.98□□□□□ -0.01
SF3B3-202ENST00000562722 INPP4AQ96PE3 977 aaPredicted RBP14.98□□□□□ -0.01
SF3B3-202ENST00000562722 YME1L1Q96TA2 773 aa14.98□□□□□ -0.01
SF3B3-202ENST00000562722 C17orf80Q9BSJ5 609 aa14.98□□□□□ -0.01
SF3B3-202ENST00000562722 MYL10Q9BUA6 226 aa14.98□□□□□ -0.01
SF3B3-202ENST00000562722 RNPEPQ9H4A4 650 aa14.98□□□□□ -0.01
SF3B3-202ENST00000562722 SETD4Q9NVD3 440 aa14.98□□□□□ -0.01
SF3B3-202ENST00000562722 UPP2O95045 317 aa14.97□□□□□ -0.01
SF3B3-202ENST00000562722 ICAM3P32942 547 aa14.97□□□□□ -0.01
SF3B3-202ENST00000562722 KIF5BP33176 963 aa14.97□□□□□ -0.01
SF3B3-202ENST00000562722 ARHGAP4P98171 946 aa14.97□□□□□ -0.01
SF3B3-202ENST00000562722 PLEKHG4Q58EX7 1191 aa14.97□□□□□ -0.01
SF3B3-202ENST00000562722 USP17L6PQ6QN14 398 aa14.97□□□□□ -0.01
SF3B3-202ENST00000562722 CASC1Q6TDU7 716 aa14.97□□□□□ -0.01
SF3B3-202ENST00000562722 NLRX1Q86UT6 975 aa14.97□□□□□ -0.01
SF3B3-202ENST00000562722 GPR20Q99678 358 aa14.97□□□□□ -0.01
SF3B3-202ENST00000562722 FRMPD4Q14CM0 1322 aa14.96□□□□□ -0.01
SF3B3-202ENST00000562722 SGSM2O43147 1006 aa14.96□□□□□ -0.01
SF3B3-202ENST00000562722 CAND2O75155 1236 aa14.96□□□□□ -0.01
SF3B3-202ENST00000562722 DDAH1O94760 285 aa14.96□□□□□ -0.01
SF3B3-202ENST00000562722 ANTXR2P58335 489 aa14.96□□□□□ -0.01
SF3B3-202ENST00000562722 PTPROQ16827 1216 aa14.96□□□□□ -0.01
SF3B3-202ENST00000562722 ZNF654Q8IZM8 581 aa14.96□□□□□ -0.01
SF3B3-202ENST00000562722 SPZ1Q9BXG8 430 aa14.96□□□□□ -0.01
SF3B3-202ENST00000562722 UBE2ZQ9H832 354 aaPredicted RBP14.96□□□□□ -0.01
SF3B3-202ENST00000562722 CCDC69A6NI79 296 aa14.95□□□□□ -0.02
SF3B3-202ENST00000562722 PRC1O43663 620 aa14.95□□□□□ -0.02
SF3B3-202ENST00000562722 KCNA5P22460 613 aa14.95□□□□□ -0.02
SF3B3-202ENST00000562722 HOXC8P31273 242 aa14.95□□□□□ -0.02
SF3B3-202ENST00000562722 HTRA4P83105 476 aaPredicted RBP14.95□□□□□ -0.02
SF3B3-202ENST00000562722 SEMA3FQ13275 785 aa14.95□□□□□ -0.02
SF3B3-202ENST00000562722 PCNX4Q63HM2 1172 aa14.95□□□□□ -0.02
SF3B3-202ENST00000562722 XRRA1Q6P2D8 792 aa14.95□□□□□ -0.02
SF3B3-202ENST00000562722 MB21D2Q8IYB1 491 aaPredicted RBP14.95□□□□□ -0.02
SF3B3-202ENST00000562722 GIMAP8Q8ND71 665 aaPredicted RBP14.95□□□□□ -0.02
SF3B3-202ENST00000562722 IGDCC4Q8TDY8 1250 aa14.95□□□□□ -0.02
SF3B3-202ENST00000562722 LMBR1Q8WVP7 490 aa14.95□□□□□ -0.02
SF3B3-202ENST00000562722 LZTS2Q9BRK4 669 aa14.95□□□□□ -0.02
SF3B3-202ENST00000562722 IFIH1Q9BYX4 1025 aaKnown RBP14.95□□□□□ -0.02
SF3B3-202ENST00000562722 LY9Q9HBG7 655 aa14.95□□□□□ -0.02
SF3B3-202ENST00000562722 SUPT16HQ9Y5B9 1047 aaKnown RBP14.95□□□□□ -0.02
SF3B3-202ENST00000562722 RBM8AQ9Y5S9 174 aaKnown RBP14.95□□□□□ -0.02
SF3B3-202ENST00000562722 GNAQP50148 359 aa14.94□□□□□ -0.02
SF3B3-202ENST00000562722 EPC2Q52LR7 807 aa14.94□□□□□ -0.02
SF3B3-202ENST00000562722 APBB2Q92870 758 aa14.94□□□□□ -0.02
SF3B3-202ENST00000562722 FAM122AQ96E09 287 aa14.94□□□□□ -0.02
SF3B3-202ENST00000562722 SAMD11Q96NU1 681 aa14.94□□□□□ -0.02
SF3B3-202ENST00000562722 MAP3K14Q99558 947 aa14.94□□□□□ -0.02
SF3B3-202ENST00000562722 SENP7Q9BQF6 1050 aa14.94□□□□□ -0.02
SF3B3-202ENST00000562722 EPHX3Q9H6B9 360 aa14.94□□□□□ -0.02
SF3B3-202ENST00000562722 PKD2L1Q9P0L9 805 aa14.94□□□□□ -0.02
SF3B3-202ENST00000562722 TELO2Q9Y4R8 837 aa14.94□□□□□ -0.02
SF3B3-202ENST00000562722 TRANK1O15050 2925 aa14.94□□□□□ -0.02
SF3B3-202ENST00000562722 BAZ2BQ9UIF8 2168 aaKnown RBP14.94□□□□□ -0.02
SF3B3-202ENST00000562722 REV3LO60673 3130 aa14.93□□□□□ -0.02
SF3B3-202ENST00000562722 PIK3CDO00329 1044 aa14.93□□□□□ -0.02
SF3B3-202ENST00000562722 PLEKHA8P1O95397 391 aa14.93□□□□□ -0.02
SF3B3-202ENST00000562722 RXRAP19793 462 aa14.93□□□□□ -0.02
SF3B3-202ENST00000562722 TCF7P36402 384 aaPredicted RBP14.93□□□□□ -0.02
SF3B3-202ENST00000562722 IRX6P78412 446 aaPredicted RBP14.93□□□□□ -0.02
SF3B3-202ENST00000562722 MKRN4PQ13434 485 aaPredicted RBP14.93□□□□□ -0.02
SF3B3-202ENST00000562722 GPM6BQ13491 265 aa14.93□□□□□ -0.02
SF3B3-202ENST00000562722 EP400NLQ6ZTU2 488 aa14.93□□□□□ -0.02
SF3B3-202ENST00000562722 CMTR1Q8N1G2 835 aaKnown RBP14.93□□□□□ -0.02
SF3B3-202ENST00000562722 SP7Q8TDD2 431 aaPredicted RBP14.93□□□□□ -0.02
SF3B3-202ENST00000562722 MAP4K1Q92918 833 aa14.93□□□□□ -0.02
SF3B3-202ENST00000562722 TOP1MTQ969P6 601 aa14.93□□□□□ -0.02
SF3B3-202ENST00000562722 MRPL38Q96DV4 380 aaKnown RBP14.93□□□□□ -0.02
SF3B3-202ENST00000562722 CDHR1Q96JP9 859 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms