RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 ALDH5A1P51649 535 aaPredicted RBP7.45□□□□□ -1.22
VPS29-210ENST00000552130 CLCN7P51798 805 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 RPS26P62854 115 aaKnown RBP7.45□□□□□ -1.22
VPS29-210ENST00000552130 SEPT2Q15019 361 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 SEPT7Q16181 437 aaKnown RBP7.45□□□□□ -1.22
VPS29-210ENST00000552130 ATP13A4Q4VNC1 1196 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 REC114Q7Z4M0 266 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 LRRC56Q8IYG6 542 aaPredicted RBP7.45□□□□□ -1.22
VPS29-210ENST00000552130 NDUFAF2Q8N183 169 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 CPA6Q8N4T0 437 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 CCT6BQ92526 530 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 TMEM87BQ96K49 555 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 LRGUKQ96M69 825 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 IPO9Q96P70 1041 aaKnown RBP7.45□□□□□ -1.22
VPS29-210ENST00000552130 CENPOQ9BU64 300 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 SEZ6LQ9BYH1 1024 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 KRTAP9-3Q9BYQ3 159 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 CEP44Q9C0F1 390 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 IFT22Q9H7X7 185 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 KIAA1586Q9HCI6 787 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 SUCOQ9UBS9 1254 aaKnown RBP7.45□□□□□ -1.22
VPS29-210ENST00000552130 RAPGEFL1Q9UHV5 662 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 GPN3Q9UHW5 284 aaPredicted RBP7.45□□□□□ -1.22
VPS29-210ENST00000552130 AFG3L2Q9Y4W6 797 aa7.45□□□□□ -1.22
VPS29-210ENST00000552130 FAM221AA4D161 298 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 CLGNO14967 610 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 SUSD5O60279 629 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 EOMESO95936 686 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 MYBL2P10244 700 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 GRB10Q13322 594 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 PDCD2Q16342 344 aaPredicted RBP7.44□□□□□ -1.22
VPS29-210ENST00000552130 TUBB8Q3ZCM7 444 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 FAM180BQ6P0A1 224 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 LILRA6Q6PI73 481 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 PRR23BQ6ZRT6 265 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 SULF2Q8IWU5 870 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 ZSCAN18Q8TBC5 510 aaPredicted RBP7.44□□□□□ -1.22
VPS29-210ENST00000552130 FRS2Q8WU20 508 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 NELL1Q92832 810 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 FUBP3Q96I24 572 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS29-210ENST00000552130 CDHR1Q96JP9 859 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 NELL2Q99435 816 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 MENTQ9BUN1 341 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 NAA15Q9BXJ9 866 aaKnown RBP7.44□□□□□ -1.22
VPS29-210ENST00000552130 SLC13A1Q9BZW2 595 aa7.44□□□□□ -1.22
VPS29-210ENST00000552130 SSU72Q9NP77 194 aaKnown RBP7.44□□□□□ -1.22
VPS29-210ENST00000552130 TRMT13Q9NUP7 481 aaKnown RBP7.44□□□□□ -1.22
VPS29-210ENST00000552130 APOBEC2Q9Y235 224 aaKnown RBP7.44□□□□□ -1.22
VPS29-210ENST00000552130 TRBV23-1A0A0A0MS06 115 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 KPNA6O60684 536 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 PYGMP11217 842 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 HSD3B1P14060 373 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 ZKSCAN1P17029 563 aaPredicted RBP7.43□□□□□ -1.22
VPS29-210ENST00000552130 TSPAN7P41732 249 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 WASHC5Q12768 1159 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 TMEM240Q5SV17 173 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 HEATR6Q6AI08 1181 aaKnown RBP7.43□□□□□ -1.22
VPS29-210ENST00000552130 SYDE1Q6ZW31 735 aaPredicted RBP7.43□□□□□ -1.22
VPS29-210ENST00000552130 UBE3DQ7Z6J8 389 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 HSCBQ8IWL3 235 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 GPBAR1Q8TDU6 330 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 ATRIPQ8WXE1 791 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 JARID2Q92833 1246 aaPredicted RBP7.43□□□□□ -1.22
VPS29-210ENST00000552130 TRIM63Q969Q1 353 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 AIFM3Q96NN9 605 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 MTFR1LQ9H019 292 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS29-210ENST00000552130 SLC4A7Q9Y6M7 1214 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 NCANO14594 1321 aa7.43□□□□□ -1.22
VPS29-210ENST00000552130 ZEB2O60315 1214 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 TLR5O60602 858 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 LTFP02788 710 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 BPIP17213 487 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 NME2P22392 152 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 RECQLP46063 649 aaPredicted RBP7.42□□□□□ -1.22
VPS29-210ENST00000552130 ID4P47928 161 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 VHLLQ6RSH7 139 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 TTLL10Q6ZVT0 673 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 AMIGO3Q86WK7 504 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 ANKLE2Q86XL3 938 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 CBARPQ8N350 705 aaPredicted RBP7.42□□□□□ -1.22
VPS29-210ENST00000552130 NKAIN3Q8N8D7 197 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 GCC1Q96CN9 775 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 KIRREL1Q96J84 757 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 AP1M1Q9BXS5 423 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 MIR1-1HGQ9H1L0 117 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 EHMT1Q9H9B1 1298 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 SEMA3GQ9NS98 782 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 C1orf112Q9NSG2 853 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 SMC4Q9NTJ3 1288 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 FNIP2Q9P278 1114 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 TTLL3Q9Y4R7 772 aa7.42□□□□□ -1.22
VPS29-210ENST00000552130 LRRFIP2Q9Y608 721 aaKnown RBP7.42□□□□□ -1.22
VPS29-210ENST00000552130 A0A1B0GVC2 190 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 hCG_1642624A0A1W2PR95 340 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 PABPN1LA6NDY0 278 aaKnown RBP7.41□□□□□ -1.22
VPS29-210ENST00000552130 TMCC2O75069 709 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 CILPO75339 1184 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 PRKD3O94806 890 aa7.41□□□□□ -1.22
VPS29-210ENST00000552130 MBD4O95243 580 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms