RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 VWA3AA6NCI4 1184 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 J3QL48 77 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 FOXP2O15409 715 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 ATF4P18848 351 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 HOXA10P31260 410 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 RBL2Q08999 1139 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 ZNF174Q15697 407 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 SPECC1LQ69YQ0 1117 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 CCDC121Q6ZUS5 278 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 CPLX4Q7Z7G2 160 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 GRAMD1CQ8IYS0 662 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 LINS1Q8NG48 757 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 GOLGA5Q8TBA6 731 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 SUSD3Q96L08 255 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 UBA5Q9GZZ9 404 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 GNL3LQ9NVN8 582 aaKnown RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 CUEDC1Q9NWM3 386 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 KCNMB2Q9Y691 235 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 MRPL42Q9Y6G3 142 aaKnown RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 GOLGA6BA6NDN3 693 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 TUBB4AP04350 444 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 RPIAP49247 311 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 CCZ1BP86790 482 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 CCZ1P86791 482 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 IFIT5Q13325 482 aaKnown RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 UBE4AQ14139 1066 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 PNMA8AQ86V59 439 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 DHX40Q8IX18 779 aaKnown RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 SMYD4Q8IYR2 804 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 ANKRD13CQ8N6S4 541 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 NLRP3Q96P20 1036 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 INSM2Q96T92 566 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 BLZF1Q9H2G9 400 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 LUC7LQ9NQ29 371 aaKnown RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.1□□□□□ -1.43
LIMA1-203ENST00000547825 LATS2Q9NRM7 1088 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 TMEM51Q9NW97 253 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 ELP1O95163 1332 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 MYH8P13535 1937 aa6.1□□□□□ -1.43
LIMA1-203ENST00000547825 EREGO14944 169 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 KRT86O43790 486 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 IGKV5-2P06315 115 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 CFAP58Q5T655 872 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 ADALQ6DHV7 355 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 PRR5LQ6MZQ0 368 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 ANKRD18AQ8IVF6 992 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 MAP4K1Q92918 833 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 AIFM3Q96NN9 605 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 CDC5LQ99459 802 aaKnown RBP6.09□□□□□ -1.43
LIMA1-203ENST00000547825 TM6SF1Q9BZW5 370 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 PPANQ9NQ55 473 aaKnown RBP6.09□□□□□ -1.43
LIMA1-203ENST00000547825 TMEM232C9JQI7 657 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 RPSAP08865 295 aaKnown RBP6.09□□□□□ -1.43
LIMA1-203ENST00000547825 EZRP15311 586 aaKnown RBP6.09□□□□□ -1.43
LIMA1-203ENST00000547825 PEX19P40855 299 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 GNGT1P63211 74 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 IKQ13123 557 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-203ENST00000547825 RESTQ13127 1097 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 TCERG1LQ5VWI1 586 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 MFSD6Q6ZSS7 791 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 SLC35F6Q8N357 371 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 UIMC1Q96RL1 719 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 TRIM31Q9BZY9 425 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 DDX21Q9NR30 783 aaKnown RBP eCLIP6.09□□□□□ -1.43
LIMA1-203ENST00000547825 CNTN3Q9P232 1028 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 CTNND2Q9UQB3 1225 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 TRIM75PA6NK02 468 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 CYP21A2P08686 494 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 MCM7P33993 719 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 CYLC1P35663 651 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-203ENST00000547825 GJA8P48165 433 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 GUCY2FP51841 1108 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 FOXC1Q12948 553 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 TCEAL1Q15170 157 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 TAF1CQ15572 869 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-203ENST00000547825 KRT40Q6A162 431 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 ZNF438Q7Z4V0 828 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 AMOTL1Q8IY63 956 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 MIGA1Q8NAN2 632 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 ALS2CR12Q96Q35 445 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 MYCBPQ99417 103 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-203ENST00000547825 JPH2Q9BR39 696 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-203ENST00000547825 BCO2Q9BYV7 579 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 ABCB6Q9NP58 842 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 DENND2AQ9ULE3 1009 aa6.09□□□□□ -1.43
LIMA1-203ENST00000547825 CCDC196A0A1B0GTZ2 297 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 E7EWF7 191 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 WNT7AO00755 349 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 OPA1O60313 960 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 NEBLO76041 1014 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 ITGBL1O95965 494 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 VAV2P52735 878 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 WDR4P57081 412 aaKnown RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 E2F5Q15329 346 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 DIS3L2Q8IYB7 885 aaKnown RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 C1orf127Q8N9H9 656 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 RHBDD1Q8TEB9 315 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 TACO1Q9BSH4 297 aaKnown RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 CHRDQ9H2X0 955 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms