RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 LRRC8DQ7L1W4 858 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 FCHSD1Q86WN1 690 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 HERC6Q8IVU3 1022 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 C7orf31Q8N865 590 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 NCOA7Q8NI08 942 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 PPTC7Q8NI37 304 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 IGDCC4Q8TDY8 1250 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 AFAP1L1Q8TED9 768 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 ATXN2LQ8WWM7 1075 aaKnown RBP9.81□□□□□ -0.84
USP28-215ENST00000545608 PIBF1Q8WXW3 757 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 WNT8BQ93098 351 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 EPAS1Q99814 870 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 FAM117AQ9C073 453 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 BCAS3Q9H6U6 928 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 THEGQ9P2T0 379 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 METRNQ9UJH8 293 aa9.81□□□□□ -0.84
USP28-215ENST00000545608 SCN5AQ14524 2016 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 PNMA6FA0A0J9YX94 578 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 ERICH2A1L162 156 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 PPFIA4O75335 1185 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 GGPS1O95749 300 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 UBA1P22314 1058 aaKnown RBP9.8□□□□□ -0.84
USP28-215ENST00000545608 CCND2P30279 289 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 TAP1Q03518 808 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 PTK7Q13308 1070 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 KCNV1Q6PIU1 500 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 TRAF7Q6Q0C0 670 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 SPRED2Q7Z698 418 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 TMCO2Q7Z6W1 182 aaPredicted RBP9.8□□□□□ -0.84
USP28-215ENST00000545608 RALYLQ86SE5 291 aaKnown RBP9.8□□□□□ -0.84
USP28-215ENST00000545608 MB21D2Q8IYB1 491 aaPredicted RBP9.8□□□□□ -0.84
USP28-215ENST00000545608 MICALL1Q8N3F8 863 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 CCDC155Q8N6L0 562 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 MAP4K1Q92918 833 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 SPATA33Q96N06 139 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 ASB2Q96Q27 587 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 C16orf70Q9BSU1 422 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 KATNAL1Q9BW62 490 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 A0A0C4DFX4 3053 aa9.8□□□□□ -0.84
USP28-215ENST00000545608 TTC28Q96AY4 2481 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 LAMA2P24043 3122 aaKnown RBP9.79□□□□□ -0.84
USP28-215ENST00000545608 TET1Q8NFU7 2136 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 KIF28PB7ZC32 967 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 BAIAP3O94812 1187 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 CXCL10P02778 98 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 TGFB3P10600 412 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 POU3F3P20264 500 aaPredicted RBP9.79□□□□□ -0.84
USP28-215ENST00000545608 FECHP22830 423 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 WDR5P61964 334 aaKnown RBP9.79□□□□□ -0.84
USP28-215ENST00000545608 DEFB103AP81534 67 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 MRPS5P82675 430 aaKnown RBP9.79□□□□□ -0.84
USP28-215ENST00000545608 MRPS9P82933 396 aaKnown RBP9.79□□□□□ -0.84
USP28-215ENST00000545608 TRAF1Q13077 416 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 COL9A3Q14050 684 aaPredicted RBP9.79□□□□□ -0.84
USP28-215ENST00000545608 MBTPS1Q14703 1052 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 SART3Q15020 963 aaKnown RBP9.79□□□□□ -0.84
USP28-215ENST00000545608 ZNF618Q5T7W0 954 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 KRT40Q6A162 431 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 CNKSR3Q6P9H4 555 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 CATIPQ7Z7H3 387 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 PARP9Q8IXQ6 854 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 ARNTL2Q8WYA1 636 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 MYL10Q9BUA6 226 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 MLXIPQ9HAP2 919 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 RTEL1Q9NZ71 1219 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 RBM8AQ9Y5S9 174 aaKnown RBP9.79□□□□□ -0.84
USP28-215ENST00000545608 MTCH2Q9Y6C9 303 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 CDH23Q9H251 3354 aa9.79□□□□□ -0.84
USP28-215ENST00000545608 LCHNA4D1U4 455 aa9.78□□□□□ -0.84
USP28-215ENST00000545608 TNFRSF10AO00220 468 aa9.78□□□□□ -0.84
USP28-215ENST00000545608 TLL1O43897 1013 aa9.78□□□□□ -0.84
USP28-215ENST00000545608 PARNO95453 639 aaKnown RBP9.78□□□□□ -0.84
USP28-215ENST00000545608 ICAM3P32942 547 aa9.78□□□□□ -0.84
USP28-215ENST00000545608 KCNJ6P48051 423 aa9.78□□□□□ -0.84
USP28-215ENST00000545608 SEMA3FQ13275 785 aa9.78□□□□□ -0.84
USP28-215ENST00000545608 ZNF654Q8IZM8 581 aa9.78□□□□□ -0.84
USP28-215ENST00000545608 LY9Q9HBG7 655 aa9.78□□□□□ -0.84
USP28-215ENST00000545608 TELO2Q9Y4R8 837 aa9.78□□□□□ -0.84
USP28-215ENST00000545608 GBF1Q92538 1859 aa9.78□□□□□ -0.84
USP28-215ENST00000545608 BAZ2BQ9UIF8 2168 aaKnown RBP9.77□□□□□ -0.85
USP28-215ENST00000545608 ABHD14A-ACY1A0A1B0GW23 586 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 SPATA31C2B4DYI2 1134 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 H3BRB1 525 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 LPXNO60711 386 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 LGALS2P05162 132 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 TFF2Q03403 129 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 GRB10Q13322 594 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 SKIV2LQ15477 1246 aaKnown RBP9.77□□□□□ -0.85
USP28-215ENST00000545608 USP17L6PQ6QN14 398 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 SERINC5Q86VE9 423 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 DBF4BQ8NFT6 615 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 ADAMTS19Q8TE59 1207 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 INPP4AQ96PE3 977 aaPredicted RBP9.77□□□□□ -0.85
USP28-215ENST00000545608 MAP3K14Q99558 947 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 ZBED2Q9BTP6 218 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 OSBPL7Q9BZF2 842 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 LSG1Q9H089 658 aaKnown RBP9.77□□□□□ -0.85
USP28-215ENST00000545608 RNPEPQ9H4A4 650 aa9.77□□□□□ -0.85
USP28-215ENST00000545608 TUT1Q9H6E5 874 aaKnown RBP9.77□□□□□ -0.85
USP28-215ENST00000545608 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms