RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PDE6AP16499 860 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 LSP1P33241 339 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 CDK17Q00537 523 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 PTPAQ15257 358 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 TTC30AQ86WT1 665 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 NPAS4Q8IUM7 802 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 PDILTQ8N807 584 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 FAM151AQ8WW52 585 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 RHOXF2Q9BQY4 288 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 SFMBT1Q9UHJ3 866 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 TLL2Q9Y6L7 1015 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 PHF20L1A8MW92 1017 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 MYO1FO00160 1098 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 SH2B2O14492 632 aaPredicted RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 LDHCP07864 332 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 PAX7P23759 505 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 RPS6KA3P51812 740 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 KRT83P78385 493 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 KARSQ15046 597 aaKnown RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 SPDYCQ5MJ68 293 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 NAIF1Q69YI7 327 aaPredicted RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 TATDN1Q6P1N9 297 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 PRMT6Q96LA8 375 aaPredicted RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 MXD3Q9BW11 206 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 RRAGCQ9HB90 399 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 CREBZFQ9NS37 354 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 ZNHIT6Q9NWK9 470 aaKnown RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 LIMA1Q9UHB6 759 aaKnown RBP5.8□□□□□ -1.48
USP28-213ENST00000544967 USTQ9Y2C2 406 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 LCTP09848 1927 aa5.8□□□□□ -1.48
USP28-213ENST00000544967 STK36Q9NRP7 1315 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 COQ9O75208 318 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 PDIA3P30101 505 aaKnown RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 KIF23Q02241 960 aaPredicted RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 SEPT2Q15019 361 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 LONRF1Q17RB8 773 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 ZC3H12AQ5D1E8 599 aaKnown RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 PI16Q6UXB8 463 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 CCDC121Q6ZUS5 278 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 SH3BP5LQ7L8J4 393 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 MYCBPAPQ8TBZ2 947 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 APPBP2Q92624 585 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 FAM227BQ96M60 508 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 ARPC5LQ9BPX5 153 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 CCDC8Q9H0W5 538 aaPredicted RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 CD248Q9HCU0 757 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 FRMPD3Q5JV73 1810 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 A0A1W2PQC6 194 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 SOWAHDA6NJG2 315 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 POM121CA8CG34 1229 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 FAM155AB1AL88 458 aaPredicted RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 RNF113AO15541 343 aaKnown RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 MYBL2P10244 700 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 NAT2P11245 290 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 FERP16591 822 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 MDH1P40925 334 aaKnown RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 GCLCP48506 637 aaPredicted RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 TNFAIP1Q13829 316 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 MCMDC2Q4G0Z9 681 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 NLRP14Q86W24 1093 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 NT5DC4Q86YG4 428 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 TRIM58Q8NG06 486 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 CENPTQ96BT3 561 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 C8orf76Q96K31 380 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 RUFY1Q96T51 708 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 PYM1Q9BRP8 204 aaKnown RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 ATP8A2Q9NTI2 1148 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 MAN1B1Q9UKM7 699 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 NFE2L3Q9Y4A8 694 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 COL11A1P12107 1806 aaPredicted RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 FLT1P17948 1338 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 PHACTR2O75167 634 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 SMNDC1O75940 238 aaKnown RBP eCLIP5.79□□□□□ -1.48
USP28-213ENST00000544967 WFS1O76024 890 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 PCP11498 1178 aaKnown RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 FDPSP14324 419 aaKnown RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 GNAT2P19087 354 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 MAGEA8P43361 318 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 VAV2P52735 878 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 MAP3K12Q12852 859 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 BIRC3Q13489 604 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 ANKRD20A8PQ5CZ79 823 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 TTC39BQ5VTQ0 682 aaPredicted RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 CST9Q5W186 159 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 FAM228AQ86W67 206 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 REM2Q8IYK8 340 aaPredicted RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 IQCKQ8N0W5 287 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 FSD1Q9BTV5 496 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 SEZ6LQ9BYH1 1024 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 DHX36Q9H2U1 1008 aaKnown RBP5.79□□□□□ -1.48
USP28-213ENST00000544967 ABHD10Q9NUJ1 306 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 TSKSQ9UJT2 592 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 CLIC4Q9Y696 253 aa5.79□□□□□ -1.48
USP28-213ENST00000544967 IGKV6D-41A0A0C4DH26 115 aa5.78□□□□□ -1.48
USP28-213ENST00000544967 IFIT3O14879 490 aaKnown RBP5.78□□□□□ -1.48
USP28-213ENST00000544967 CDKL5O76039 1030 aa5.78□□□□□ -1.48
USP28-213ENST00000544967 CYP21A2P08686 494 aa5.78□□□□□ -1.48
USP28-213ENST00000544967 SETSIPP0DME0 302 aa5.78□□□□□ -1.48
USP28-213ENST00000544967 CCNHP51946 323 aaPredicted RBP5.78□□□□□ -1.48
USP28-213ENST00000544967 ADKP55263 362 aaKnown RBP5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms