RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 CASC1Q6TDU7 716 aa16.31■□□□□ 0.2
SNHG1-213ENST00000540725 RRP36Q96EU6 259 aaKnown RBP16.31■□□□□ 0.2
SNHG1-213ENST00000540725 TUT1Q9H6E5 874 aaKnown RBP16.31■□□□□ 0.2
SNHG1-213ENST00000540725 EMSYQ7Z589 1322 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 C17orf102A2RUQ5 167 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 SPATA31C2B4DYI2 1134 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 NOP56O00567 594 aaKnown RBP16.3■□□□□ 0.2
SNHG1-213ENST00000540725 PRC1O43663 620 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 LGR5O75473 907 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 GJB5O95377 273 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 HOXC8P31273 242 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 THPOP40225 353 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 TFF2Q03403 129 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 GRB10Q13322 594 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 IKBKEQ14164 716 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 NEDD9Q14511 834 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 SMARCC2Q8TAQ2 1214 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 ATP6V0A1Q93050 837 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 UHRF1Q96T88 793 aaPredicted RBP16.3■□□□□ 0.2
SNHG1-213ENST00000540725 MTA3Q9BTC8 594 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 RTEL1Q9NZ71 1219 aa16.3■□□□□ 0.2
SNHG1-213ENST00000540725 RSPH10B2B2RC85 870 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 FIBPO43427 364 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 RSPH10BP0C881 870 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 SMIM10L2AP0DMW4 78 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 SMIM10L2BP0DMW5 78 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 SMARCA1P28370 1054 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 USP17L6PQ6QN14 398 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 METTL7BQ6UX53 244 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 CYFIP1Q7L576 1253 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 CUL5Q93034 780 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 RAD9AQ99638 391 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 USP26Q9BXU7 913 aa16.29■□□□□ 0.2
SNHG1-213ENST00000540725 SEC63Q9UGP8 760 aaKnown RBP16.29■□□□□ 0.2
SNHG1-213ENST00000540725 PIK3CDO00329 1044 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 SH2B2O14492 632 aaPredicted RBP16.28■□□□□ 0.2
SNHG1-213ENST00000540725 MEIS2O14770 477 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 LPXNO60711 386 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 PLEKHA8P1O95397 391 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 MCM5P33992 734 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 GNAQP50148 359 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 AAK1Q2M2I8 961 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 PCNX4Q63HM2 1172 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 FAM117BQ6P1L5 589 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 NFXL1Q6ZNB6 911 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 GPR20Q99678 358 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 LZTS2Q9BRK4 669 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 LSG1Q9H089 658 aaKnown RBP16.28■□□□□ 0.2
SNHG1-213ENST00000540725 RNPEPQ9H4A4 650 aa16.28■□□□□ 0.2
SNHG1-213ENST00000540725 NLRC5Q86WI3 1866 aa16.27■□□□□ 0.2
SNHG1-213ENST00000540725 CCDC69A6NI79 296 aa16.27■□□□□ 0.2
SNHG1-213ENST00000540725 TREHO43280 583 aa16.27■□□□□ 0.2
SNHG1-213ENST00000540725 BMP1P13497 986 aa16.27■□□□□ 0.2
SNHG1-213ENST00000540725 COL9A3Q14050 684 aaPredicted RBP16.27■□□□□ 0.2
SNHG1-213ENST00000540725 XRRA1Q6P2D8 792 aa16.27■□□□□ 0.2
SNHG1-213ENST00000540725 TRIM50Q86XT4 487 aa16.27■□□□□ 0.2
SNHG1-213ENST00000540725 TMTC2Q8N394 836 aa16.27■□□□□ 0.2
SNHG1-213ENST00000540725 SRBD1Q8N5C6 995 aaKnown RBP16.27■□□□□ 0.2
SNHG1-213ENST00000540725 DBF4BQ8NFT6 615 aa16.27■□□□□ 0.2
SNHG1-213ENST00000540725 GDPD5Q8WTR4 605 aa16.27■□□□□ 0.2
SNHG1-213ENST00000540725 TMEM87BQ96K49 555 aa16.27■□□□□ 0.2
SNHG1-213ENST00000540725 MYO7AQ13402 2215 aa16.27■□□□□ 0.2
SNHG1-213ENST00000540725 LINC01553A4QN01 128 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 SLC27A2O14975 620 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 RXRAP19793 462 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 KCNQ1P51787 676 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 SP4Q02446 784 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 MKRN4PQ13434 485 aaPredicted RBP16.26■□□□□ 0.19
SNHG1-213ENST00000540725 UTP14CQ5TAP6 766 aaKnown RBP16.26■□□□□ 0.19
SNHG1-213ENST00000540725 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.26■□□□□ 0.19
SNHG1-213ENST00000540725 NLRX1Q86UT6 975 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 CMTR1Q8N1G2 835 aaKnown RBP16.26■□□□□ 0.19
SNHG1-213ENST00000540725 TGS1Q96RS0 853 aaKnown RBP16.26■□□□□ 0.19
SNHG1-213ENST00000540725 SENP7Q9BQF6 1050 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 ESYT1Q9BSJ8 1104 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 SETD4Q9NVD3 440 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 ZNF215Q9UL58 517 aaPredicted RBP16.26■□□□□ 0.19
SNHG1-213ENST00000540725 MTUS1Q9ULD2 1270 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 COG5Q9UP83 839 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 TELO2Q9Y4R8 837 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 CAND2O75155 1236 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 AMHP03971 560 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 CTSHP09668 335 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 CALM1P0DP23 149 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 CALM2P0DP24 149 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 CALM3P0DP25 149 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 GNAT1P11488 350 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 LIFRP42702 1097 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 ERVK-21P61565 698 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 PLEKHG4Q58EX7 1191 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 RAB11FIP4Q86YS3 637 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 MYOCDQ8IZQ8 938 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 NECAB3Q96P71 396 aaPredicted RBP16.26■□□□□ 0.19
SNHG1-213ENST00000540725 LMCD1Q9NZU5 365 aa16.26■□□□□ 0.19
SNHG1-213ENST00000540725 CREB3L3Q68CJ9 461 aa16.25■□□□□ 0.19
SNHG1-213ENST00000540725 GIMAP8Q8ND71 665 aaPredicted RBP16.25■□□□□ 0.19
SNHG1-213ENST00000540725 SEPT8Q92599 483 aa16.25■□□□□ 0.19
SNHG1-213ENST00000540725 GPRASP2Q96D09 838 aa16.25■□□□□ 0.19
SNHG1-213ENST00000540725 LRRC2Q9BYS8 371 aa16.25■□□□□ 0.19
SNHG1-213ENST00000540725 PSTPIP2Q9H939 334 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 386.5 ms