RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 FGBP02675 491 aa17.26■□□□□ 0.35
USP39-217ENST00000491659 PFKMP08237 780 aa17.26■□□□□ 0.35
USP39-217ENST00000491659 PDIA3P30101 505 aaKnown RBP17.26■□□□□ 0.35
USP39-217ENST00000491659 RFC2P35250 354 aa17.26■□□□□ 0.35
USP39-217ENST00000491659 CCT2P78371 535 aaKnown RBP17.26■□□□□ 0.35
USP39-217ENST00000491659 SP4Q02446 784 aa17.26■□□□□ 0.35
USP39-217ENST00000491659 TOB2Q14106 344 aaPredicted RBP17.26■□□□□ 0.35
USP39-217ENST00000491659 PHKBQ93100 1093 aa17.26■□□□□ 0.35
USP39-217ENST00000491659 PGBD1Q96JS3 809 aa17.26■□□□□ 0.35
USP39-217ENST00000491659 GPR20Q99678 358 aa17.26■□□□□ 0.35
USP39-217ENST00000491659 C16orf70Q9BSU1 422 aa17.26■□□□□ 0.35
USP39-217ENST00000491659 RNF26Q9BY78 433 aaPredicted RBP17.26■□□□□ 0.35
USP39-217ENST00000491659 GBF1Q92538 1859 aa17.26■□□□□ 0.35
USP39-217ENST00000491659 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.25■□□□□ 0.35
USP39-217ENST00000491659 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.25■□□□□ 0.35
USP39-217ENST00000491659 ESYT2A0FGR8 921 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 H3BRB1 525 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 MAFGO15525 162 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 ITGB5P18084 799 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 CCDC148Q8NFR7 591 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 AFAP1L1Q8TED9 768 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 HERVK_113Q902F9 699 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 SLC26A6Q9BXS9 759 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 TUT1Q9H6E5 874 aaKnown RBP17.25■□□□□ 0.35
USP39-217ENST00000491659 BCAS3Q9H6U6 928 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 NCOA5Q9HCD5 579 aaKnown RBP17.25■□□□□ 0.35
USP39-217ENST00000491659 C6orf50Q9HD87 102 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 JADE2Q9NQC1 790 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 PDRG1Q9NUG6 133 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 PKD2L1Q9P0L9 805 aa17.25■□□□□ 0.35
USP39-217ENST00000491659 ZNF215Q9UL58 517 aaPredicted RBP17.25■□□□□ 0.35
USP39-217ENST00000491659 IQCF3P0C7M6 154 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 KCNA2P16389 499 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 IFNAR1P17181 557 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 SREBF1P36956 1147 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 CLK2P49760 499 aaKnown RBP17.24■□□□□ 0.35
USP39-217ENST00000491659 NTRK3Q16288 839 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 RASIP1Q5U651 963 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 MCTP2Q6DN12 878 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 DEFB128Q7Z7B8 93 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 TRIM22Q8IYM9 498 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 MXRA8Q9BRK3 442 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 ZMYND12Q9H0C1 365 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 TMEM260Q9NX78 707 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 MTMR10Q9NXD2 777 aa17.24■□□□□ 0.35
USP39-217ENST00000491659 TMEM265A0A087WTH1 108 aa17.23■□□□□ 0.35
USP39-217ENST00000491659 C17orf102A2RUQ5 167 aa17.23■□□□□ 0.35
USP39-217ENST00000491659 CPLX1O14810 134 aa17.23■□□□□ 0.35
USP39-217ENST00000491659 ACTN1P12814 892 aa17.23■□□□□ 0.35
USP39-217ENST00000491659 GNA11P29992 359 aa17.23■□□□□ 0.35
USP39-217ENST00000491659 ANAPC15P60006 121 aa17.23■□□□□ 0.35
USP39-217ENST00000491659 PTK7Q13308 1070 aa17.23■□□□□ 0.35
USP39-217ENST00000491659 PKN1Q16512 942 aa17.23■□□□□ 0.35
USP39-217ENST00000491659 UTP14CQ5TAP6 766 aaKnown RBP17.23■□□□□ 0.35
USP39-217ENST00000491659 JAKMIP3Q5VZ66 844 aa17.23■□□□□ 0.35
USP39-217ENST00000491659 CPLX2Q6PUV4 134 aaKnown RBP17.23■□□□□ 0.35
USP39-217ENST00000491659 OTOP2Q7RTS6 562 aa17.23■□□□□ 0.35
USP39-217ENST00000491659 REXO1Q8N1G1 1221 aaKnown RBP17.23■□□□□ 0.35
USP39-217ENST00000491659 BICD2Q8TD16 824 aa17.23■□□□□ 0.35
USP39-217ENST00000491659 ZNF274Q96GC6 653 aaPredicted RBP17.23■□□□□ 0.35
USP39-217ENST00000491659 KAT6AQ92794 2004 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 ZBBXA8MT70 800 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 ATP9AO75110 1047 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 PPFIA3O75145 1194 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 SMIM10L2AP0DMW4 78 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 SMIM10L2BP0DMW5 78 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 SELPP16109 830 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 TCF7P36402 384 aaPredicted RBP17.22■□□□□ 0.35
USP39-217ENST00000491659 ZNF76P36508 570 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 RBL2Q08999 1139 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 CEP55Q53EZ4 464 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 LRRC8DQ7L1W4 858 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 TRIM50Q86XT4 487 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 DHX38Q92620 1227 aaKnown RBP17.22■□□□□ 0.35
USP39-217ENST00000491659 FAM161BQ96MY7 647 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 CTAGE1Q96RT6 745 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 KCNH7Q9NS40 1196 aa17.22■□□□□ 0.35
USP39-217ENST00000491659 CXXC1Q9P0U4 656 aaPredicted RBP17.22■□□□□ 0.35
USP39-217ENST00000491659 PARNO95453 639 aaKnown RBP17.21■□□□□ 0.35
USP39-217ENST00000491659 DNAJB2P25686 324 aa17.21■□□□□ 0.35
USP39-217ENST00000491659 ARHGAP4P98171 946 aa17.21■□□□□ 0.35
USP39-217ENST00000491659 SSRP1Q08945 709 aaKnown RBP17.21■□□□□ 0.35
USP39-217ENST00000491659 STK3Q13188 491 aa17.21■□□□□ 0.35
USP39-217ENST00000491659 SEPT1Q8WYJ6 367 aa17.21■□□□□ 0.35
USP39-217ENST00000491659 ATP6V0A1Q93050 837 aa17.21■□□□□ 0.35
USP39-217ENST00000491659 SDF4Q9BRK5 362 aa17.21■□□□□ 0.35
USP39-217ENST00000491659 FTOQ9C0B1 505 aaKnown RBP eCLIP17.21■□□□□ 0.35
USP39-217ENST00000491659 JPH1Q9HDC5 661 aaPredicted RBP17.21■□□□□ 0.35
USP39-217ENST00000491659 SLC4A7Q9Y6M7 1214 aa17.21■□□□□ 0.35
USP39-217ENST00000491659 NFASCO94856 1347 aa17.21■□□□□ 0.34
USP39-217ENST00000491659 GNAT1P11488 350 aa17.2■□□□□ 0.34
USP39-217ENST00000491659 CKBP12277 381 aa17.2■□□□□ 0.34
USP39-217ENST00000491659 ZNF200P98182 395 aaPredicted RBP17.2■□□□□ 0.34
USP39-217ENST00000491659 RAB30Q15771 203 aa17.2■□□□□ 0.34
USP39-217ENST00000491659 LARP6Q9BRS8 491 aaKnown RBP17.2■□□□□ 0.34
USP39-217ENST00000491659 SH3GLB2Q9NR46 395 aa17.2■□□□□ 0.34
USP39-217ENST00000491659 VPS54Q9P1Q0 977 aa17.2■□□□□ 0.34
USP39-217ENST00000491659 SLC9A2Q9UBY0 812 aa17.2■□□□□ 0.34
USP39-217ENST00000491659 STXBP5LQ9Y2K9 1186 aa17.2■□□□□ 0.34
USP39-217ENST00000491659 TELO2Q9Y4R8 837 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms