RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SPATC1LQ9H0A9 340 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 CYP39A1Q9NYL5 469 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 NRBP1Q9UHY1 535 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 VAV3Q9UKW4 847 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 UBIAD1Q9Y5Z9 338 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 IPO5O00410 1097 aaKnown RBP20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 RRP9O43818 475 aaKnown RBP20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 NRDCO43847 1150 aa20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 CELF2O95319 508 aaKnown RBP20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 SPIRE1Q08AE8 756 aa20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 NCAPHQ15003 741 aa20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 ZNF658Q5TYW1 1059 aaPredicted RBP20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 MTERF4Q7Z6M4 381 aaKnown RBP20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 ANKRD35Q8N283 1001 aa20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 DNERQ8NFT8 737 aa20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 CYP2W1Q8TAV3 490 aa20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 CACTINQ8WUQ7 758 aaKnown RBP20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 CDHR1Q96JP9 859 aa20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 BLZF1Q9H2G9 400 aa20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 TBC1D22BQ9NU19 505 aa20.33■□□□□ 0.84
CCDC88C-203ENST00000389856 PSMD10O75832 226 aa20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 ZBTB48P10074 688 aaPredicted RBP20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 MTMR1Q13613 665 aa20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 CHADLQ6NUI6 762 aa20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 CNNM4Q6P4Q7 775 aa20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 STAMQ92783 540 aa20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 IWS1Q96ST2 819 aa20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 TRIM9Q9C026 710 aa20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 TUFT1Q9NNX1 390 aa20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 A1CFQ9NQ94 594 aaKnown RBP20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 EXOC1Q9NV70 894 aa20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 ADD3Q9UEY8 706 aaKnown RBP20.32■□□□□ 0.84
CCDC88C-203ENST00000389856 MYCLP12524 364 aaPredicted RBP20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 KCNJ6P48051 423 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 ASIC1P78348 528 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 CCDC144BQ3MJ40 725 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 GNPTABQ3T906 1256 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 OTOP1Q7RTM1 612 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 GPRASP2Q96D09 838 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 MTRQ99707 1265 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 KIAA1024Q9UPX6 916 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 DNM3Q9UQ16 869 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 A0A087WWV3 80 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 PVALEFA0A1B0GWK0 134 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 VSIG10LQ86VR7 867 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 ENOX1Q8TC92 643 aaKnown RBP20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 PAGR1Q9BTK6 254 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 KCNH7Q9NS40 1196 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 BLOC1S4Q9NUP1 217 aa20.31■□□□□ 0.84
CCDC88C-203ENST00000389856 RHOBTB3O94955 611 aa20.3■□□□□ 0.84
CCDC88C-203ENST00000389856 NR3C2P08235 984 aa20.3■□□□□ 0.84
CCDC88C-203ENST00000389856 ITGB5P18084 799 aa20.3■□□□□ 0.84
CCDC88C-203ENST00000389856 MOGSQ13724 837 aa20.3■□□□□ 0.84
CCDC88C-203ENST00000389856 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.3■□□□□ 0.84
CCDC88C-203ENST00000389856 NCAPG2Q86XI2 1143 aa20.3■□□□□ 0.84
CCDC88C-203ENST00000389856 GJA10Q969M2 543 aa20.3■□□□□ 0.84
CCDC88C-203ENST00000389856 MROH8Q9H579 483 aa20.3■□□□□ 0.84
CCDC88C-203ENST00000389856 BTBD7Q9P203 1132 aa20.3■□□□□ 0.84
CCDC88C-203ENST00000389856 TRPM7Q96QT4 1865 aa20.3■□□□□ 0.84
CCDC88C-203ENST00000389856 ARP10275 920 aa20.29■□□□□ 0.84
CCDC88C-203ENST00000389856 BMP6P22004 513 aa20.29■□□□□ 0.84
CCDC88C-203ENST00000389856 CCNA1P78396 465 aa20.29■□□□□ 0.84
CCDC88C-203ENST00000389856 LRMPQ12912 555 aa20.29■□□□□ 0.84
CCDC88C-203ENST00000389856 MCM6Q14566 821 aa20.29■□□□□ 0.84
CCDC88C-203ENST00000389856 EPHA7Q15375 998 aa20.29■□□□□ 0.84
CCDC88C-203ENST00000389856 GPAT2Q6NUI2 795 aa20.29■□□□□ 0.84
CCDC88C-203ENST00000389856 EIF2AK1Q9BQI3 630 aaKnown RBP20.29■□□□□ 0.84
CCDC88C-203ENST00000389856 AGO4Q9HCK5 861 aaKnown RBP20.29■□□□□ 0.84
CCDC88C-203ENST00000389856 NMRK2Q9NPI5 230 aa20.29■□□□□ 0.84
CCDC88C-203ENST00000389856 LOXHD1Q8IVV2 1947 aa20.29■□□□□ 0.84
CCDC88C-203ENST00000389856 CCL15-CCL14A0A0B4J2E2 113 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 POTEB3A0JP26 581 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 CASP1P29466 404 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 GJA5P36382 358 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 MRPS9P82933 396 aaKnown RBP20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 FANCCQ00597 558 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 CCL15Q16663 113 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 KMT5BQ4FZB7 885 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 POTEBQ6S5H4 581 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 UNC13DQ70J99 1090 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 ANKRD23Q86SG2 305 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 CATSPER3Q86XQ3 398 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 C17orf53Q8N3J3 647 aaPredicted RBP20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 SHCBP1Q8NEM2 672 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 IL31RAQ8NI17 732 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 NUDT12Q9BQG2 462 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 XPO4Q9C0E2 1151 aaKnown RBP20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 IFNKQ9P0W0 207 aa20.28■□□□□ 0.84
CCDC88C-203ENST00000389856 POTEB2H3BUK9 544 aa20.27■□□□□ 0.84
CCDC88C-203ENST00000389856 KIF2AO00139 706 aaPredicted RBP20.27■□□□□ 0.84
CCDC88C-203ENST00000389856 MED24O75448 989 aa20.27■□□□□ 0.84
CCDC88C-203ENST00000389856 PLA2G4BP0C869 781 aa20.27■□□□□ 0.84
CCDC88C-203ENST00000389856 GCLCP48506 637 aaPredicted RBP20.27■□□□□ 0.84
CCDC88C-203ENST00000389856 KRT76Q01546 638 aa20.27■□□□□ 0.84
CCDC88C-203ENST00000389856 PSMD2Q13200 908 aa20.27■□□□□ 0.84
CCDC88C-203ENST00000389856 SMCR8Q8TEV9 937 aaPredicted RBP20.27■□□□□ 0.84
CCDC88C-203ENST00000389856 MOV10L1Q9BXT6 1211 aaKnown RBP20.27■□□□□ 0.84
CCDC88C-203ENST00000389856 PAXBP1Q9Y5B6 917 aa20.27■□□□□ 0.84
CCDC88C-203ENST00000389856 SYNRGQ9UMZ2 1314 aa20.27■□□□□ 0.84
CCDC88C-203ENST00000389856 TESPA1A2RU30 521 aaPredicted RBP20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms