RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TKFCQ3LXA3 575 aa15.41■□□□□ 0.06
PTPRF-202ENST00000372405 UNC13DQ70J99 1090 aa15.41■□□□□ 0.06
PTPRF-202ENST00000372405 PNMA8AQ86V59 439 aaPredicted RBP15.41■□□□□ 0.06
PTPRF-202ENST00000372405 ERMNQ8TAM6 284 aa15.41■□□□□ 0.06
PTPRF-202ENST00000372405 RMDN3Q96TC7 470 aa15.41■□□□□ 0.06
PTPRF-202ENST00000372405 HSD17B14Q9BPX1 270 aa15.41■□□□□ 0.06
PTPRF-202ENST00000372405 PDCD2LQ9BRP1 358 aa15.41■□□□□ 0.06
PTPRF-202ENST00000372405 KCNH7Q9NS40 1196 aa15.41■□□□□ 0.06
PTPRF-202ENST00000372405 KCNH4Q9UQ05 1017 aa15.41■□□□□ 0.06
PTPRF-202ENST00000372405 PVALEFA0A1B0GWK0 134 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 TRIM49BA6NDI0 452 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 TRAF5O00463 557 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 GAS7O60861 476 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 SERPINC1P01008 464 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 HOXA7P31268 230 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-202ENST00000372405 SLC12A3P55017 1021 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 ARID5BQ14865 1188 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 ARSHQ5FYA8 562 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 MAP1SQ66K74 1059 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-202ENST00000372405 LBX2Q6XYB7 198 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 GADL1Q6ZQY3 521 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 NIPA1Q7RTP0 329 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 PROCA1Q8NCQ7 364 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-202ENST00000372405 POLR3CQ9BUI4 534 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-202ENST00000372405 UNC45AQ9H3U1 944 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 BTBD7Q9P203 1132 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 KIAA1217Q5T5P2 1943 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 CXCL11O14625 94 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 DHX15O43143 795 aaKnown RBP15.4■□□□□ 0.06
PTPRF-202ENST00000372405 CHMP2AO43633 222 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 CYP11B2P19099 503 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 GJA5P36382 358 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 PPIL2Q13356 520 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 PLS1Q14651 629 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 PTPN21Q16825 1174 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 LDLRAD1Q5T700 205 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 OPTNQ96CV9 577 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 A1CFQ9NQ94 594 aaKnown RBP15.4■□□□□ 0.06
PTPRF-202ENST00000372405 JADE2Q9NQC1 790 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 CYP39A1Q9NYL5 469 aa15.4■□□□□ 0.06
PTPRF-202ENST00000372405 NPHP3-ACAD11A0A0J9YXS1 232 aa15.39■□□□□ 0.05
PTPRF-202ENST00000372405 SLITRK3O94933 977 aa15.39■□□□□ 0.05
PTPRF-202ENST00000372405 SSBP05455 408 aaKnown RBP eCLIP15.39■□□□□ 0.05
PTPRF-202ENST00000372405 LRMPQ12912 555 aa15.39■□□□□ 0.05
PTPRF-202ENST00000372405 ITGB3BPQ13352 177 aaPredicted RBP15.39■□□□□ 0.05
PTPRF-202ENST00000372405 FILIP1Q7Z7B0 1213 aa15.39■□□□□ 0.05
PTPRF-202ENST00000372405 ACAD9Q9H845 621 aa15.39■□□□□ 0.05
PTPRF-202ENST00000372405 AGO4Q9HCK5 861 aaKnown RBP15.39■□□□□ 0.05
PTPRF-202ENST00000372405 SLC39A2Q9NP94 309 aa15.39■□□□□ 0.05
PTPRF-202ENST00000372405 RTN4Q9NQC3 1192 aaKnown RBP15.39■□□□□ 0.05
PTPRF-202ENST00000372405 MYCLP12524 364 aaPredicted RBP15.38■□□□□ 0.05
PTPRF-202ENST00000372405 PABPC4Q13310 644 aaKnown RBP eCLIP15.38■□□□□ 0.05
PTPRF-202ENST00000372405 CTTNQ14247 550 aaKnown RBP15.38■□□□□ 0.05
PTPRF-202ENST00000372405 COBLL1Q53SF7 1204 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 TTI2Q6NXR4 508 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 GPBP1Q86WP2 473 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 GLIS3Q8NEA6 775 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 CACTINQ8WUQ7 758 aaKnown RBP15.38■□□□□ 0.05
PTPRF-202ENST00000372405 DYDC2Q96IM9 177 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 RIT2Q99578 217 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 LRRC27Q9C0I9 530 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 PKD2L1Q9P0L9 805 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 WRAP73Q9P2S5 460 aaPredicted RBP15.38■□□□□ 0.05
PTPRF-202ENST00000372405 STK24Q9Y6E0 443 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 TPM3P06753 285 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 IDEP14735 1019 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 CDK11BP21127 795 aaKnown RBP15.38■□□□□ 0.05
PTPRF-202ENST00000372405 MTMR1Q13613 665 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 ARHGEF16Q5VV41 709 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 ARMC9Q7Z3E5 817 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 TMC6Q7Z403 805 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 IRF2BP1Q8IU81 584 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 CCDC47Q96A33 483 aaKnown RBP15.38■□□□□ 0.05
PTPRF-202ENST00000372405 DHTKD1Q96HY7 919 aaPredicted RBP15.38■□□□□ 0.05
PTPRF-202ENST00000372405 DUSP9Q99956 384 aaKnown RBP15.38■□□□□ 0.05
PTPRF-202ENST00000372405 TEKT3Q9BXF9 490 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 ASCC2Q9H1I8 757 aaPredicted RBP15.38■□□□□ 0.05
PTPRF-202ENST00000372405 DNM3Q9UQ16 869 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 CLEC11AQ9Y240 323 aa15.38■□□□□ 0.05
PTPRF-202ENST00000372405 DDX39AO00148 427 aaKnown RBP15.37■□□□□ 0.05
PTPRF-202ENST00000372405 CBFA2T2O43439 604 aa15.37■□□□□ 0.05
PTPRF-202ENST00000372405 MSNP26038 577 aaKnown RBP15.37■□□□□ 0.05
PTPRF-202ENST00000372405 CACNB1Q02641 598 aaPredicted RBP15.37■□□□□ 0.05
PTPRF-202ENST00000372405 COASYQ13057 564 aa15.37■□□□□ 0.05
PTPRF-202ENST00000372405 VSIG10LQ86VR7 867 aa15.37■□□□□ 0.05
PTPRF-202ENST00000372405 SYT2Q8N9I0 419 aaPredicted RBP15.37■□□□□ 0.05
PTPRF-202ENST00000372405 TUFT1Q9NNX1 390 aa15.37■□□□□ 0.05
PTPRF-202ENST00000372405 PYCARDQ9ULZ3 195 aa15.37■□□□□ 0.05
PTPRF-202ENST00000372405 AGTPBP1Q9UPW5 1226 aa15.37■□□□□ 0.05
PTPRF-202ENST00000372405 DOCK5Q9H7D0 1870 aa15.37■□□□□ 0.05
PTPRF-202ENST00000372405 A0A1B0GTH6 734 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 FRMD3A2A2Y4 597 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 PSMA7O14818 248 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 ZBTB39O15060 712 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 ATP9AO75110 1047 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 CNMDO75829 334 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 NR3C2P08235 984 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 RAD51AP2Q09MP3 1159 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 STIM1Q13586 685 aa15.36■□□□□ 0.05
PTPRF-202ENST00000372405 NR1I3Q14994 352 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms