RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 FDPSP14324 419 aaKnown RBP16.77■□□□□ 0.28
SHH-201ENST00000297261 LONP1P36776 959 aaKnown RBP16.77■□□□□ 0.28
SHH-201ENST00000297261 TRAF1Q13077 416 aa16.77■□□□□ 0.28
SHH-201ENST00000297261 SH2D3CQ8N5H7 860 aa16.77■□□□□ 0.28
SHH-201ENST00000297261 TC2NQ8N9U0 490 aa16.77■□□□□ 0.28
SHH-201ENST00000297261 GUCY1A2P33402 732 aa16.77■□□□□ 0.28
SHH-201ENST00000297261 LRRC41Q15345 812 aa16.77■□□□□ 0.28
SHH-201ENST00000297261 USH1GQ495M9 461 aa16.77■□□□□ 0.28
SHH-201ENST00000297261 ANKRD20A3Q5VUR7 823 aa16.77■□□□□ 0.28
SHH-201ENST00000297261 COL14A1Q05707 1796 aaKnown RBP16.77■□□□□ 0.27
SHH-201ENST00000297261 TCRBV5S4A2TA0A5A2 114 aa16.77■□□□□ 0.27
SHH-201ENST00000297261 TXNDC9O14530 226 aa16.77■□□□□ 0.27
SHH-201ENST00000297261 FMR1Q06787 632 aaKnown RBP eCLIP16.77■□□□□ 0.27
SHH-201ENST00000297261 RAD9BQ6WBX8 426 aa16.77■□□□□ 0.27
SHH-201ENST00000297261 ADGRA1Q86SQ6 560 aa16.77■□□□□ 0.27
SHH-201ENST00000297261 ARMCX3Q9UH62 379 aaPredicted RBP16.77■□□□□ 0.27
SHH-201ENST00000297261 BCS1LQ9Y276 419 aa16.77■□□□□ 0.27
SHH-201ENST00000297261 STK36Q9NRP7 1315 aa16.77■□□□□ 0.27
SHH-201ENST00000297261 LRRD1A4D1F6 860 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 GBP5Q96PP8 586 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 MMS19Q96T76 1030 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 CHP1Q99653 195 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 AP1M1Q9BXS5 423 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.76■□□□□ 0.27
SHH-201ENST00000297261 HPS5Q9UPZ3 1129 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 PLAAQ9Y263 795 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 CIB2O75838 187 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 GUCY1A3Q02108 690 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 ICA1Q05084 483 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 PAF1Q8N7H5 531 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.76■□□□□ 0.273e-7■■□□□ 13.9
SHH-201ENST00000297261 KCPQ6ZWJ8 1503 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 OR52Z1P0C646 297 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 XRCC5P13010 732 aaKnown RBP16.76■□□□□ 0.27
SHH-201ENST00000297261 CHRNA5P30532 468 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 CAPN12Q6ZSI9 719 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 FAM212AQ96EL1 285 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 CPVLQ9H3G5 476 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 MLXIPQ9HAP2 919 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 CUL4BQ13620 913 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 RASIP1Q5U651 963 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 APBB1IPQ7Z5R6 666 aaPredicted RBP16.76■□□□□ 0.27
SHH-201ENST00000297261 REXO1L1PQ8IX06 675 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 ADAMTS1Q9UHI8 967 aa16.76■□□□□ 0.27
SHH-201ENST00000297261 HMGB1P1B2RPK0 211 aaPredicted RBP16.75■□□□□ 0.27
SHH-201ENST00000297261 RASSF2P50749 326 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 TTLL12Q14166 644 aaPredicted RBP16.75■□□□□ 0.27
SHH-201ENST00000297261 C12orf60Q5U649 245 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 CCDC62Q6P9F0 684 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 OXER1Q8TDS5 423 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 DHTKD1Q96HY7 919 aaPredicted RBP16.75■□□□□ 0.27
SHH-201ENST00000297261 SYNCQ9H7C4 482 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 BACH1O14867 736 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 CHMP2AO43633 222 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 KRT5P13647 590 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 NFRKBQ6P4R8 1299 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 TMEM47Q9BQJ4 181 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 PSD3Q9NYI0 1048 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.75■□□□□ 0.27
SHH-201ENST00000297261 ORC4O43929 436 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 GCNT3O95395 438 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 TTLL1O95922 423 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 FXR1P51114 621 aaKnown RBP eCLIP16.75■□□□□ 0.27
SHH-201ENST00000297261 ENGASEQ8NFI3 743 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 WHAMMQ8TF30 809 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 ELAC2Q9BQ52 826 aaKnown RBP16.75■□□□□ 0.27
SHH-201ENST00000297261 ZBTB21Q9ULJ3 1066 aa16.75■□□□□ 0.27
SHH-201ENST00000297261 FAM26FQ5R3K3 315 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 PODNQ7Z5L7 613 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 TRIM10Q9UDY6 481 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 EIF4E1BA6NMX2 242 aaKnown RBP16.74■□□□□ 0.27
SHH-201ENST00000297261 ZNF185O15231 689 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 USP37Q86T82 979 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 PIGSQ96S52 555 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 CSRNP1Q96S65 589 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 RIOK1Q9BRS2 568 aaKnown RBP16.74■□□□□ 0.27
SHH-201ENST00000297261 DAAM1Q9Y4D1 1078 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 DISP2A7MBM2 1401 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 PGRMC1O00264 195 aaKnown RBP16.74■□□□□ 0.27
SHH-201ENST00000297261 GDF11O95390 407 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 CRKP46108 304 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 CORO7P57737 925 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 MYO1EQ12965 1108 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 MAEAQ7L5Y9 396 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 MAGOHBQ96A72 148 aaKnown RBP16.74■□□□□ 0.27
SHH-201ENST00000297261 CCDC17Q96LX7 622 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 FAM114A2Q9NRY5 505 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 PCDHA4Q9UN74 947 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 GAS8O95995 478 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 CCNE1P24864 410 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 RCAN1P53805 252 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 ADAM9Q13443 819 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 AOC3Q16853 763 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 SLFN13Q68D06 897 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 KCTD1Q719H9 257 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 KRT26Q7Z3Y9 468 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 TTLL6Q8N841 843 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 PNKPQ96T60 521 aa16.74■□□□□ 0.27
SHH-201ENST00000297261 H3BQF6 201 aa16.73■□□□□ 0.27
SHH-201ENST00000297261 NCK2O43639 380 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms