RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 MYH4Q9Y623 1939 aa16.84■□□□□ 0.29
DDX56-201ENST00000258772 ARFGEF1Q9Y6D6 1849 aa16.83■□□□□ 0.29
DDX56-201ENST00000258772 KDM3AQ9Y4C1 1321 aa16.83■□□□□ 0.29
DDX56-201ENST00000258772 NCK2O43639 380 aa16.83■□□□□ 0.28
DDX56-201ENST00000258772 SHMT1P34896 483 aa16.83■□□□□ 0.28
DDX56-201ENST00000258772 MATR3P43243 847 aaKnown RBP eCLIP16.83■□□□□ 0.28
DDX56-201ENST00000258772 CCDC181Q5TID7 509 aa16.83■□□□□ 0.28
DDX56-201ENST00000258772 KLHDC7AQ5VTJ3 777 aa16.83■□□□□ 0.28
DDX56-201ENST00000258772 SFMBT2Q5VUG0 894 aa16.83■□□□□ 0.28
DDX56-201ENST00000258772 KCTD1Q719H9 257 aa16.83■□□□□ 0.28
DDX56-201ENST00000258772 DHX37Q8IY37 1157 aaKnown RBP16.83■□□□□ 0.28
DDX56-201ENST00000258772 MYO3BQ8WXR4 1341 aa16.83■□□□□ 0.28
DDX56-201ENST00000258772 BUB1O43683 1085 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 GNA14O95837 355 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 SERPING1P05155 500 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 PAFAH1B1P43034 410 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 LRRC31Q6UY01 552 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 CCDC65Q8IXS2 484 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 CRAMP1Q96RY5 1269 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 SMARCAL1Q9NZC9 954 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 EHD2Q9NZN4 543 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 SUGT1Q9Y2Z0 365 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 RIMBP2O15034 1052 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 PLA2G4BP0C869 781 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 MARSP56192 900 aaKnown RBP16.82■□□□□ 0.28
DDX56-201ENST00000258772 POLR2FP61218 127 aaKnown RBP16.82■□□□□ 0.28
DDX56-201ENST00000258772 TRIM59Q8IWR1 403 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 NELFCDQ8IXH7 590 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 USP40Q9NVE5 1235 aa16.82■□□□□ 0.28
DDX56-201ENST00000258772 GOLGA6BA6NDN3 693 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 MRPS25P82663 173 aaKnown RBP16.81■□□□□ 0.28
DDX56-201ENST00000258772 SLC7A5Q01650 507 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 HERC4Q5GLZ8 1057 aaPredicted RBP16.81■□□□□ 0.28
DDX56-201ENST00000258772 FOXR1Q6PIV2 292 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 SND1Q7KZF4 910 aaKnown RBP eCLIP16.81■□□□□ 0.28
DDX56-201ENST00000258772 CERS5Q8N5B7 392 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 UIMC1Q96RL1 719 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 NAP1L4Q99733 375 aaKnown RBP16.81■□□□□ 0.28
DDX56-201ENST00000258772 LSM14BQ9BX40 385 aaKnown RBP16.81■□□□□ 0.28
DDX56-201ENST00000258772 COA1Q9GZY4 146 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 LCMT1Q9UIC8 334 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.81■□□□□ 0.28
DDX56-201ENST00000258772 C10orf71Q711Q0 1435 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 NPHP3-ACAD11A0A0J9YXS1 232 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 USP17L15C9J2P7 530 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 USP17L13C9JLJ4 530 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 USP17L11C9JVI0 530 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 USP17L18D6R9N7 530 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 USP17L22D6RA61 530 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 USP17L17D6RBQ6 530 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 USP17L19D6RCP7 530 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 USP17L20D6RJB6 530 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 NAP1L1P55209 391 aaKnown RBP16.81■□□□□ 0.28
DDX56-201ENST00000258772 USP17L24Q0WX57 530 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 HAUS3Q68CZ6 603 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 USP17L6PQ6QN14 398 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 SRLQ86TD4 932 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 SCFD1Q8WVM8 642 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 KCTD10Q9H3F6 313 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 EMILIN3Q9NT22 766 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 STIM2Q9P246 746 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 ATP6V0A2Q9Y487 856 aa16.81■□□□□ 0.28
DDX56-201ENST00000258772 ATAD5Q96QE3 1844 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 POTEB3A0JP26 581 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 POTECB2RU33 542 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 MPHOSPH10O00566 681 aaKnown RBP16.8■□□□□ 0.28
DDX56-201ENST00000258772 CYP11B2P19099 503 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 CACNB1Q02641 598 aaPredicted RBP16.8■□□□□ 0.28
DDX56-201ENST00000258772 POTEBQ6S5H4 581 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.8■□□□□ 0.28
DDX56-201ENST00000258772 GPBP1Q86WP2 473 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 KANSL2Q9H9L4 492 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 KCNMB3Q9NPA1 279 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 FEZ2Q9UHY8 353 aaPredicted RBP16.8■□□□□ 0.28
DDX56-201ENST00000258772 TSKSQ9UJT2 592 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 USP21Q9UK80 565 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 THSD7AQ9UPZ6 1657 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 MYO1CO00159 1063 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 USP11P51784 963 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 APBA1Q02410 837 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 TMC4Q7Z404 712 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 SP8Q8IXZ3 490 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 TSPYL1Q9H0U9 437 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 GLT8D2Q9H1C3 349 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 RBM12Q9NTZ6 932 aaKnown RBP16.8■□□□□ 0.28
DDX56-201ENST00000258772 LTBP1Q14766 1721 aa16.8■□□□□ 0.28
DDX56-201ENST00000258772 EPHB4P54760 987 aa16.79■□□□□ 0.28
DDX56-201ENST00000258772 ADAM9Q13443 819 aa16.79■□□□□ 0.28
DDX56-201ENST00000258772 NAB2Q15742 525 aa16.79■□□□□ 0.28
DDX56-201ENST00000258772 CFAP221Q4G0U5 840 aa16.79■□□□□ 0.28
DDX56-201ENST00000258772 ZC3H3Q8IXZ2 948 aaKnown RBP16.79■□□□□ 0.28
DDX56-201ENST00000258772 TBC1D5Q92609 795 aa16.79■□□□□ 0.28
DDX56-201ENST00000258772 LUC7LQ9NQ29 371 aaKnown RBP16.79■□□□□ 0.28
DDX56-201ENST00000258772 RNF14Q9UBS8 474 aa16.79■□□□□ 0.28
DDX56-201ENST00000258772 RRP15Q9Y3B9 282 aaKnown RBP16.79■□□□□ 0.28
DDX56-201ENST00000258772 GREB1LQ9C091 1923 aaPredicted RBP16.79■□□□□ 0.28
DDX56-201ENST00000258772 UBR3Q6ZT12 1888 aa16.79■□□□□ 0.28
DDX56-201ENST00000258772 CYP3A7-CYP3A51PA0A087WV96 503 aa16.79■□□□□ 0.28
DDX56-201ENST00000258772 SLC26A4O43511 780 aa16.79■□□□□ 0.28
DDX56-201ENST00000258772 TOM1O60784 492 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms