RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 HAS1Q92839 578 aa25.33■■□□□ 1.65
CDX1-201ENST00000231656 INTS13Q9NVM9 706 aa25.33■■□□□ 1.65
CDX1-201ENST00000231656 LRWD1Q9UFC0 647 aa25.33■■□□□ 1.65
CDX1-201ENST00000231656 ERCC3P19447 782 aa25.33■■□□□ 1.65
CDX1-201ENST00000231656 SEMA3FQ13275 785 aa25.33■■□□□ 1.65
CDX1-201ENST00000231656 PURBQ96QR8 312 aaKnown RBP25.33■■□□□ 1.65
CDX1-201ENST00000231656 FRMPD4Q14CM0 1322 aa25.33■■□□□ 1.64
CDX1-201ENST00000231656 LCTP09848 1927 aa25.32■■□□□ 1.64
CDX1-201ENST00000231656 ZNF76P36508 570 aa25.32■■□□□ 1.64
CDX1-201ENST00000231656 GRB10Q13322 594 aa25.32■■□□□ 1.64
CDX1-201ENST00000231656 Q4G0T1 1027 aa25.32■■□□□ 1.64
CDX1-201ENST00000231656 CALML4Q96GE6 196 aa25.32■■□□□ 1.64
CDX1-201ENST00000231656 RMDN3Q96TC7 470 aa25.32■■□□□ 1.64
CDX1-201ENST00000231656 PARK7Q99497 189 aaKnown RBP25.32■■□□□ 1.64
CDX1-201ENST00000231656 R3HDMLQ9H3Y0 253 aa25.32■■□□□ 1.64
CDX1-201ENST00000231656 IGF2BP3O00425 579 aaKnown RBP eCLIP25.31■■□□□ 1.64
CDX1-201ENST00000231656 COPB2P35606 906 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 GCLCP48506 637 aaPredicted RBP25.31■■□□□ 1.64
CDX1-201ENST00000231656 STX17P56962 302 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 CCZ1BP86790 482 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 CCZ1P86791 482 aaPredicted RBP25.31■■□□□ 1.64
CDX1-201ENST00000231656 PRR16Q569H4 304 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 HSP90AA4PQ58FG1 418 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 CDKAL1Q5VV42 579 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 VSTM4Q8IW00 320 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 LENG9Q96B70 501 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 PNMA5Q96PV4 448 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 RAB34Q9BZG1 259 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 PXMP2Q9NR77 195 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 CTNND2Q9UQB3 1225 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 KMT5BQ4FZB7 885 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 ANKRD35Q8N283 1001 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 ANKRD13CQ8N6S4 541 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 CCDC150Q8NCX0 1101 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 CYP2W1Q8TAV3 490 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 C7orf25Q9BPX7 421 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 KCNMB3Q9NPA1 279 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 RWDD2AQ9UIY3 292 aa25.31■■□□□ 1.64
CDX1-201ENST00000231656 IGLV3-22A0A075B6J6 115 aa25.3■■□□□ 1.64
CDX1-201ENST00000231656 POTEMA6NI47 508 aa25.3■■□□□ 1.64
CDX1-201ENST00000231656 CDK11BP21127 795 aaKnown RBP25.3■■□□□ 1.64
CDX1-201ENST00000231656 INHBEP58166 350 aa25.3■■□□□ 1.64
CDX1-201ENST00000231656 ARMCX5Q6P1M9 558 aa25.3■■□□□ 1.64
CDX1-201ENST00000231656 GPRC5AQ8NFJ5 357 aa25.3■■□□□ 1.64
CDX1-201ENST00000231656 IL31RAQ8NI17 732 aa25.3■■□□□ 1.64
CDX1-201ENST00000231656 GDAQ9Y2T3 454 aa25.3■■□□□ 1.64
CDX1-201ENST00000231656 PFASO15067 1338 aa25.3■■□□□ 1.64
CDX1-201ENST00000231656 RHOBTB3O94955 611 aa25.29■■□□□ 1.64
CDX1-201ENST00000231656 EIF2AK2P19525 551 aaKnown RBP25.29■■□□□ 1.64
CDX1-201ENST00000231656 DHX8Q14562 1220 aaKnown RBP25.29■■□□□ 1.64
CDX1-201ENST00000231656 PGM5Q15124 567 aa25.29■■□□□ 1.64
CDX1-201ENST00000231656 PDCD2LQ9BRP1 358 aa25.29■■□□□ 1.64
CDX1-201ENST00000231656 TRIM9Q9C026 710 aa25.29■■□□□ 1.64
CDX1-201ENST00000231656 ZCCHC17Q9NP64 241 aaKnown RBP25.29■■□□□ 1.64
CDX1-201ENST00000231656 BLOC1S4Q9NUP1 217 aa25.29■■□□□ 1.64
CDX1-201ENST00000231656 MORF4L1Q9UBU8 362 aa25.29■■□□□ 1.64
CDX1-201ENST00000231656 STK17AQ9UEE5 414 aa25.29■■□□□ 1.64
CDX1-201ENST00000231656 CEP55Q53EZ4 464 aa25.28■■□□□ 1.64
CDX1-201ENST00000231656 ARHGEF16Q5VV41 709 aa25.28■■□□□ 1.64
CDX1-201ENST00000231656 PCNX4Q63HM2 1172 aa25.28■■□□□ 1.64
CDX1-201ENST00000231656 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.28■■□□□ 1.64
CDX1-201ENST00000231656 APTXQ7Z2E3 356 aaKnown RBP25.28■■□□□ 1.64
CDX1-201ENST00000231656 SHCBP1Q8NEM2 672 aa25.28■■□□□ 1.64
CDX1-201ENST00000231656 ETNPPLQ8TBG4 499 aa25.28■■□□□ 1.64
CDX1-201ENST00000231656 PRCPP42785 496 aa25.28■■□□□ 1.64
CDX1-201ENST00000231656 PAK1Q13153 545 aa25.28■■□□□ 1.64
CDX1-201ENST00000231656 GJA10Q969M2 543 aa25.28■■□□□ 1.64
CDX1-201ENST00000231656 ZFP91Q96JP5 570 aaPredicted RBP25.28■■□□□ 1.64
CDX1-201ENST00000231656 NUDT12Q9BQG2 462 aa25.28■■□□□ 1.64
CDX1-201ENST00000231656 PORCNQ9H237 461 aa25.28■■□□□ 1.64
CDX1-201ENST00000231656 MROH8Q9H579 483 aa25.28■■□□□ 1.64
CDX1-201ENST00000231656 ZNFX1Q9P2E3 1918 aaKnown RBP25.28■■□□□ 1.64
CDX1-201ENST00000231656 TBX3O15119 743 aa25.27■■□□□ 1.64
CDX1-201ENST00000231656 MARCH6O60337 910 aa25.27■■□□□ 1.64
CDX1-201ENST00000231656 SKILP12757 684 aa25.27■■□□□ 1.64
CDX1-201ENST00000231656 TMEM119Q4V9L6 283 aa25.27■■□□□ 1.64
CDX1-201ENST00000231656 PAXIP1Q6ZW49 1069 aaPredicted RBP25.27■■□□□ 1.64
CDX1-201ENST00000231656 IFNL1Q8IU54 200 aa25.27■■□□□ 1.64
CDX1-201ENST00000231656 ADSSL1Q8N142 457 aa25.27■■□□□ 1.64
CDX1-201ENST00000231656 GIMAP8Q8ND71 665 aaPredicted RBP25.27■■□□□ 1.64
CDX1-201ENST00000231656 NSUN6Q8TEA1 469 aaKnown RBP25.27■■□□□ 1.64
CDX1-201ENST00000231656 NELFBQ8WX92 580 aa25.27■■□□□ 1.64
CDX1-201ENST00000231656 A0A1B0GTH6 734 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 CCNA1P78396 465 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 MRPS9P82933 396 aaKnown RBP25.26■■□□□ 1.63
CDX1-201ENST00000231656 KRT79Q5XKE5 535 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 SNX29Q8TEQ0 813 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 UIMC1Q96RL1 719 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 MXRA8Q9BRK3 442 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 MEIS1O00470 390 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 MSH4O15457 936 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 AMPD3Q01432 767 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 SREBF2Q12772 1141 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 GRM1Q13255 1194 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 NR1I3Q14994 352 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 CYP4F22Q6NT55 531 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 SLFN12Q8IYM2 578 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 ZIC5Q96T25 663 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 EFCC1Q9HA90 598 aa25.26■■□□□ 1.63
CDX1-201ENST00000231656 PCDHA12Q9UN75 941 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms