RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 GH1P01241 217 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 MMP1P03956 469 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 UBA1P22314 1058 aaKnown RBP23.15■■□□□ 1.3
PTCD3-220ENST00000627371 FOSBP53539 338 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 ARHGAP1Q07960 439 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 CUL4AQ13619 759 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 FSCN1Q16658 493 aaKnown RBP23.15■■□□□ 1.3
PTCD3-220ENST00000627371 GNASQ5JWF2 1037 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 KRT40Q6A162 431 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 PCSK9Q8NBP7 692 aaKnown RBP23.15■■□□□ 1.3
PTCD3-220ENST00000627371 SNX21Q969T3 373 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 CDHR1Q96JP9 859 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 C8orf76Q96K31 380 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 MXRA8Q9BRK3 442 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 BRMS1Q9HCU9 246 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 PHF24Q9UPV7 400 aa23.15■■□□□ 1.3
PTCD3-220ENST00000627371 DNAH12Q6ZR08 3092 aa23.14■■□□□ 1.3
PTCD3-220ENST00000627371 MOXD2PA6NHM9 499 aa23.14■■□□□ 1.29
PTCD3-220ENST00000627371 KRT2P35908 639 aa23.14■■□□□ 1.29
PTCD3-220ENST00000627371 BEX3Q00994 111 aa23.14■■□□□ 1.29
PTCD3-220ENST00000627371 SP2Q02086 613 aa23.14■■□□□ 1.29
PTCD3-220ENST00000627371 MTMR1Q13613 665 aa23.14■■□□□ 1.29
PTCD3-220ENST00000627371 KCNA10Q16322 511 aa23.14■■□□□ 1.29
PTCD3-220ENST00000627371 CEP55Q53EZ4 464 aa23.14■■□□□ 1.29
PTCD3-220ENST00000627371 KRT25Q7Z3Z0 450 aa23.14■■□□□ 1.29
PTCD3-220ENST00000627371 OXER1Q8TDS5 423 aa23.14■■□□□ 1.29
PTCD3-220ENST00000627371 EMID1Q96A84 441 aaPredicted RBP23.14■■□□□ 1.29
PTCD3-220ENST00000627371 KIF3AQ9Y496 699 aa23.14■■□□□ 1.29
PTCD3-220ENST00000627371 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.14■■□□□ 1.29
PTCD3-220ENST00000627371 MAFGO15525 162 aa23.13■■□□□ 1.29
PTCD3-220ENST00000627371 CPT1AP50416 773 aa23.13■■□□□ 1.29
PTCD3-220ENST00000627371 NIPA1Q7RTP0 329 aa23.13■■□□□ 1.29
PTCD3-220ENST00000627371 K7ELQ4 463 aaPredicted RBP23.12■■□□□ 1.29
PTCD3-220ENST00000627371 ZEB2O60315 1214 aa23.12■■□□□ 1.29
PTCD3-220ENST00000627371 GGPS1O95749 300 aa23.12■■□□□ 1.29
PTCD3-220ENST00000627371 ASGR1P07306 291 aa23.12■■□□□ 1.29
PTCD3-220ENST00000627371 CIITAP33076 1130 aa23.12■■□□□ 1.29
PTCD3-220ENST00000627371 ZNF76P36508 570 aa23.12■■□□□ 1.29
PTCD3-220ENST00000627371 ACLYP53396 1101 aa23.12■■□□□ 1.29
PTCD3-220ENST00000627371 LAMC2Q13753 1193 aa23.12■■□□□ 1.29
PTCD3-220ENST00000627371 NEDD9Q14511 834 aa23.12■■□□□ 1.29
PTCD3-220ENST00000627371 NONOQ15233 471 aaKnown RBP eCLIP23.12■■□□□ 1.29
PTCD3-220ENST00000627371 CELF3Q5SZQ8 465 aaKnown RBP23.12■■□□□ 1.29
PTCD3-220ENST00000627371 DHX37Q8IY37 1157 aaKnown RBP23.12■■□□□ 1.29
PTCD3-220ENST00000627371 CYP2W1Q8TAV3 490 aa23.12■■□□□ 1.29
PTCD3-220ENST00000627371 TBCKQ8TEA7 893 aa23.12■■□□□ 1.29
PTCD3-220ENST00000627371 SENP7Q9BQF6 1050 aa23.12■■□□□ 1.29
PTCD3-220ENST00000627371 SENP6Q9GZR1 1112 aaPredicted RBP23.12■■□□□ 1.29
PTCD3-220ENST00000627371 TNRC18O15417 2968 aaPredicted RBP23.11■■□□□ 1.29
PTCD3-220ENST00000627371 SCN10AQ9Y5Y9 1956 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 CCDC194A0A1B0GVG4 234 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 A6NJR5 290 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 FAM86B1E9PN63 330 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 MEIS1O00470 390 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 FAM86B2P0C5J1 330 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 GJB2P29033 226 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 USP11P51784 963 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 BRDTQ58F21 947 aaPredicted RBP23.11■■□□□ 1.29
PTCD3-220ENST00000627371 MYSM1Q5VVJ2 828 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 DIS3L2Q8IYB7 885 aaKnown RBP23.11■■□□□ 1.29
PTCD3-220ENST00000627371 FBXO18Q8NFZ0 1043 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 TNFRSF25Q93038 417 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 KCNH7Q9NS40 1196 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 SMC3Q9UQE7 1217 aa23.11■■□□□ 1.29
PTCD3-220ENST00000627371 IGLV3-22A0A075B6J6 115 aa23.1■■□□□ 1.29
PTCD3-220ENST00000627371 A0A1W2PQ45 241 aaPredicted RBP23.1■■□□□ 1.29
PTCD3-220ENST00000627371 A0A1W2PQY0 241 aa23.1■■□□□ 1.29
PTCD3-220ENST00000627371 EDIL3O43854 480 aa23.1■■□□□ 1.29
PTCD3-220ENST00000627371 KCNA2P16389 499 aa23.1■■□□□ 1.29
PTCD3-220ENST00000627371 GUCY1B3Q02153 619 aa23.1■■□□□ 1.29
PTCD3-220ENST00000627371 NR5A1Q13285 461 aa23.1■■□□□ 1.29
PTCD3-220ENST00000627371 SAFBQ15424 915 aaKnown RBP eCLIP23.1■■□□□ 1.29
PTCD3-220ENST00000627371 GIMAP8Q8ND71 665 aaPredicted RBP23.1■■□□□ 1.29
PTCD3-220ENST00000627371 PPTC7Q8NI37 304 aa23.1■■□□□ 1.29
PTCD3-220ENST00000627371 AFG1LQ8WV93 481 aa23.1■■□□□ 1.29
PTCD3-220ENST00000627371 BTBD18B2RXH4 712 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 ATP9AO75110 1047 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 MMP3P08254 477 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 SETQ01105 290 aaPredicted RBP23.09■■□□□ 1.29
PTCD3-220ENST00000627371 MLLT1Q03111 559 aaPredicted RBP23.09■■□□□ 1.29
PTCD3-220ENST00000627371 INF2Q27J81 1249 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 METTL7BQ6UX53 244 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 PIK3AP1Q6ZUJ8 805 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 PLA2G4DQ86XP0 818 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 HSCBQ8IWL3 235 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 FERMT2Q96AC1 680 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 HTATIP2Q9BUP3 242 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 MLXIPQ9HAP2 919 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 POLR3EQ9NVU0 708 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 PDE4DIPQ5VU43 2346 aa23.09■■□□□ 1.29
PTCD3-220ENST00000627371 CABYRO75952 493 aa23.08■■□□□ 1.29
PTCD3-220ENST00000627371 ARP10275 920 aa23.08■■□□□ 1.29
PTCD3-220ENST00000627371 EARS2Q5JPH6 523 aaKnown RBP23.08■■□□□ 1.29
PTCD3-220ENST00000627371 MOXD1Q6UVY6 613 aa23.08■■□□□ 1.29
PTCD3-220ENST00000627371 CXCL17Q6UXB2 119 aa23.08■■□□□ 1.29
PTCD3-220ENST00000627371 CYFIP1Q7L576 1253 aa23.08■■□□□ 1.29
PTCD3-220ENST00000627371 GLT1D1Q96MS3 346 aa23.08■■□□□ 1.29
PTCD3-220ENST00000627371 SPATA33Q96N06 139 aa23.08■■□□□ 1.29
PTCD3-220ENST00000627371 BCAS3Q9H6U6 928 aa23.08■■□□□ 1.29
PTCD3-220ENST00000627371 AGO4Q9HCK5 861 aaKnown RBP23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms