RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ADAMTS4O75173 837 aa17.09■□□□□ 0.33
TRIM28-207ENST00000597136 BEX3Q00994 111 aa17.09■□□□□ 0.33
TRIM28-207ENST00000597136 SEMA3FQ13275 785 aa17.09■□□□□ 0.33
TRIM28-207ENST00000597136 AP3B2Q13367 1082 aa17.09■□□□□ 0.33
TRIM28-207ENST00000597136 LRRC41Q15345 812 aa17.09■□□□□ 0.33
TRIM28-207ENST00000597136 FERMT3Q86UX7 667 aa17.09■□□□□ 0.33
TRIM28-207ENST00000597136 DIS3L2Q8IYB7 885 aaKnown RBP17.09■□□□□ 0.33
TRIM28-207ENST00000597136 DAGLBQ8NCG7 672 aa17.09■□□□□ 0.33
TRIM28-207ENST00000597136 BICD2Q8TD16 824 aa17.09■□□□□ 0.33
TRIM28-207ENST00000597136 CRYGNQ8WXF5 182 aa17.09■□□□□ 0.33
TRIM28-207ENST00000597136 PAWRQ96IZ0 340 aaKnown RBP17.09■□□□□ 0.33
TRIM28-207ENST00000597136 DDX41Q9UJV9 622 aaKnown RBP17.09■□□□□ 0.33
TRIM28-207ENST00000597136 BTBD18B2RXH4 712 aa17.08■□□□□ 0.32
TRIM28-207ENST00000597136 SORBS3O60504 671 aa17.08■□□□□ 0.32
TRIM28-207ENST00000597136 ITGB5P18084 799 aa17.08■□□□□ 0.32
TRIM28-207ENST00000597136 KRT2P35908 639 aa17.08■□□□□ 0.32
TRIM28-207ENST00000597136 SREBF1P36956 1147 aa17.08■□□□□ 0.32
TRIM28-207ENST00000597136 BRMS1Q9HCU9 246 aa17.08■□□□□ 0.32
TRIM28-207ENST00000597136 SCN10AQ9Y5Y9 1956 aa17.08■□□□□ 0.32
TRIM28-207ENST00000597136 KIF28PB7ZC32 967 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 F13A1P00488 732 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 C6orf222P0C671 652 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-207ENST00000597136 U2AF2P26368 475 aaKnown RBP eCLIP17.07■□□□□ 0.327e-29■■■■□ 21.3
TRIM28-207ENST00000597136 GJA9P57773 515 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 ARHGAP4P98171 946 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 NR5A1Q13285 461 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 TTLL4Q14679 1199 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 EARS2Q5JPH6 523 aaKnown RBP17.07■□□□□ 0.32
TRIM28-207ENST00000597136 UBE2Q1Q7Z7E8 422 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 TLK2Q86UE8 772 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 TEX2Q8IWB9 1127 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 KLHDC9Q8NEP7 349 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 INPP4AQ96PE3 977 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-207ENST00000597136 UPF3AQ9H1J1 476 aaKnown RBP17.07■□□□□ 0.32
TRIM28-207ENST00000597136 FOXP1Q9H334 677 aaPredicted RBP17.07■□□□□ 0.32
TRIM28-207ENST00000597136 UBIAD1Q9Y5Z9 338 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 MRVI1Q9Y6F6 885 aa17.07■□□□□ 0.32
TRIM28-207ENST00000597136 FAM205CA6NFA0 338 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 ATP9AO75110 1047 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 FARP2O94887 1054 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-207ENST00000597136 RESTQ13127 1097 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 KCNA10Q16322 511 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 XRRA1Q6P2D8 792 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 ARRDC4Q8NCT1 418 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 TNFRSF25Q93038 417 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 UIMC1Q96RL1 719 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 ZSCAN16Q9H4T2 348 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-207ENST00000597136 EHMT1Q9H9B1 1298 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 EVPLQ92817 2033 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 SPATA31C2B4DYI2 1134 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 RGS19P49795 217 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 GNL2Q13823 731 aaKnown RBP17.06■□□□□ 0.32
TRIM28-207ENST00000597136 GNASQ5JWF2 1037 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 CCSAPQ6IQ19 270 aaPredicted RBP17.06■□□□□ 0.32
TRIM28-207ENST00000597136 NOSTRINQ8IVI9 506 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 ANKLE1Q8NAG6 615 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 FERMT2Q96AC1 680 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 MXRA8Q9BRK3 442 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 TELO2Q9Y4R8 837 aa17.06■□□□□ 0.32
TRIM28-207ENST00000597136 FAM86B1E9PN63 330 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 STAM2O75886 525 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 CYP3A4P08684 503 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 FAM86B2P0C5J1 330 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 ARP10275 920 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 ICAM3P32942 547 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 ARHGAP1Q07960 439 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 BRAPQ7Z569 592 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 OR6J1Q8NGC5 347 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 TBCKQ8TEA7 893 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 AP5M1Q9H0R1 490 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 JADE2Q9NQC1 790 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 PKD2L1Q9P0L9 805 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 Q9Y3F1 56 aa17.05■□□□□ 0.32
TRIM28-207ENST00000597136 MEIS1O00470 390 aa17.04■□□□□ 0.32
TRIM28-207ENST00000597136 UBA1P22314 1058 aaKnown RBP17.04■□□□□ 0.32
TRIM28-207ENST00000597136 INF2Q27J81 1249 aa17.04■□□□□ 0.32
TRIM28-207ENST00000597136 MCTP2Q6DN12 878 aa17.04■□□□□ 0.32
TRIM28-207ENST00000597136 RNF180Q86T96 592 aa17.04■□□□□ 0.32
TRIM28-207ENST00000597136 SENP6Q9GZR1 1112 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-207ENST00000597136 MYH15Q9Y2K3 1946 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 IGLV3-22A0A075B6J6 115 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 DNM1LO00429 736 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 NKRFO15226 690 aaKnown RBP eCLIP17.03■□□□□ 0.32
TRIM28-207ENST00000597136 FIBPO43427 364 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 GGPS1O95749 300 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 GH1P01241 217 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 TGFB3P10600 412 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 COL6A1P12109 1028 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 ZNF76P36508 570 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 NKX3-2P78367 333 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 FSCN1Q16658 493 aaKnown RBP17.03■□□□□ 0.32
TRIM28-207ENST00000597136 GNPTABQ3T906 1256 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 CEP55Q53EZ4 464 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 MYSM1Q5VVJ2 828 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 PIK3AP1Q6ZUJ8 805 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 NLRX1Q86UT6 975 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 AFG1LQ8WV93 481 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 TNPO1Q92973 898 aaKnown RBP17.03■□□□□ 0.32
TRIM28-207ENST00000597136 SPC25Q9HBM1 224 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 KCNH7Q9NS40 1196 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms