RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 SP2Q02086 613 aa23.45■■□□□ 1.34
SS18-224ENST00000584083 PPIGQ13427 754 aaKnown RBP eCLIP23.45■■□□□ 1.344e-6■■□□□ 13.5
SS18-224ENST00000584083 INPP4AQ96PE3 977 aaPredicted RBP23.45■■□□□ 1.34
SS18-224ENST00000584083 AGXT2Q9BYV1 514 aa23.45■■□□□ 1.34
SS18-224ENST00000584083 FIBPO43427 364 aa23.44■■□□□ 1.34
SS18-224ENST00000584083 CSF2RAP15509 400 aa23.44■■□□□ 1.34
SS18-224ENST00000584083 PTPN11Q06124 597 aaPredicted RBP23.44■■□□□ 1.34
SS18-224ENST00000584083 PPP1R18Q6NYC8 613 aa23.44■■□□□ 1.34
SS18-224ENST00000584083 RNPC3Q96LT9 517 aaKnown RBP23.44■■□□□ 1.34
SS18-224ENST00000584083 NOC4LQ9BVI4 516 aaKnown RBP23.44■■□□□ 1.34
SS18-224ENST00000584083 PCDHA6Q9UN73 950 aa23.44■■□□□ 1.34
SS18-224ENST00000584083 PCDHA8Q9Y5H6 950 aa23.44■■□□□ 1.34
SS18-224ENST00000584083 UMODL1Q5DID0 1318 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 SPATA31C2B4DYI2 1134 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 hCG_1984214I3L0E3 225 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 STXBP3O00186 592 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 CYP2C9P11712 490 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 ICAM3P32942 547 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 ADCY7P51828 1080 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 HSDL1Q3SXM5 330 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 TYW1BQ6NUM6 668 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 NLRX1Q86UT6 975 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 ZNF713Q8N859 430 aaPredicted RBP23.43■■□□□ 1.34
SS18-224ENST00000584083 TM6SF1Q9BZW5 370 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 EHMT1Q9H9B1 1298 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 RIC8AQ9NPQ8 531 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 BARHL2Q9NY43 387 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 NOD1Q9Y239 953 aa23.43■■□□□ 1.34
SS18-224ENST00000584083 SMCO2A6NFE2 343 aa23.42■■□□□ 1.34
SS18-224ENST00000584083 PPFIA4O75335 1185 aa23.42■■□□□ 1.34
SS18-224ENST00000584083 ZNF286BP0CG31 522 aa23.42■■□□□ 1.34
SS18-224ENST00000584083 CCL23P55773 120 aa23.42■■□□□ 1.34
SS18-224ENST00000584083 NEDD9Q14511 834 aa23.42■■□□□ 1.34
SS18-224ENST00000584083 KAT2BQ92831 832 aa23.42■■□□□ 1.34
SS18-224ENST00000584083 ALG1Q9BT22 464 aa23.42■■□□□ 1.34
SS18-224ENST00000584083 KATNAL1Q9BW62 490 aa23.42■■□□□ 1.34
SS18-224ENST00000584083 UPF3BQ9BZI7 483 aaKnown RBP23.42■■□□□ 1.34
SS18-224ENST00000584083 NOP56O00567 594 aaKnown RBP23.41■■□□□ 1.34
SS18-224ENST00000584083 SCG2P13521 617 aa23.41■■□□□ 1.34
SS18-224ENST00000584083 PDIA3P30101 505 aaKnown RBP23.41■■□□□ 1.34
SS18-224ENST00000584083 PSEN2P49810 448 aa23.41■■□□□ 1.34
SS18-224ENST00000584083 CCT2P78371 535 aaKnown RBP23.41■■□□□ 1.34
SS18-224ENST00000584083 AKAP17AQ02040 695 aaKnown RBP23.41■■□□□ 1.34
SS18-224ENST00000584083 SEMA3FQ13275 785 aa23.41■■□□□ 1.34
SS18-224ENST00000584083 PFKFB3Q16875 520 aaPredicted RBP23.41■■□□□ 1.34
SS18-224ENST00000584083 GPR153Q6NV75 609 aa23.41■■□□□ 1.34
SS18-224ENST00000584083 BCAS3Q9H6U6 928 aa23.41■■□□□ 1.34
SS18-224ENST00000584083 NID2Q14112 1375 aa23.4■■□□□ 1.34
SS18-224ENST00000584083 ACRP10323 421 aa23.4■■□□□ 1.34
SS18-224ENST00000584083 TOB2Q14106 344 aaPredicted RBP23.4■■□□□ 1.34
SS18-224ENST00000584083 MFSD10Q14728 455 aa23.4■■□□□ 1.34
SS18-224ENST00000584083 CYFIP1Q7L576 1253 aa23.4■■□□□ 1.34
SS18-224ENST00000584083 C7orf31Q8N865 590 aa23.4■■□□□ 1.34
SS18-224ENST00000584083 PHKBQ93100 1093 aa23.4■■□□□ 1.34
SS18-224ENST00000584083 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.4■■□□□ 1.34
SS18-224ENST00000584083 GLT8D2Q9H1C3 349 aa23.4■■□□□ 1.34
SS18-224ENST00000584083 LAMA3Q16787 3333 aa23.4■■□□□ 1.34
SS18-224ENST00000584083 TRIP12Q14669 1992 aaPredicted RBP23.4■■□□□ 1.34
SS18-224ENST00000584083 PRPF3O43395 683 aaKnown RBP23.39■■□□□ 1.33
SS18-224ENST00000584083 F2P00734 622 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 FOSP01100 380 aaPredicted RBP23.39■■□□□ 1.33
SS18-224ENST00000584083 HOXD8P13378 290 aaPredicted RBP23.39■■□□□ 1.33
SS18-224ENST00000584083 EVCP57679 992 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 PTGISQ16647 500 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 KIAA0753Q2KHM9 967 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 METTL7BQ6UX53 244 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 SESTD1Q86VW0 696 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 TEX2Q8IWB9 1127 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 GPRASP2Q96D09 838 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 CDHR1Q96JP9 859 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 LARP6Q9BRS8 491 aaKnown RBP23.39■■□□□ 1.33
SS18-224ENST00000584083 WNT8AQ9H1J5 351 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 NCOA5Q9HCD5 579 aaKnown RBP23.39■■□□□ 1.33
SS18-224ENST00000584083 IL23AQ9NPF7 189 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 PDRG1Q9NUG6 133 aa23.39■■□□□ 1.33
SS18-224ENST00000584083 TMEM240Q5SV17 173 aa23.38■■□□□ 1.33
SS18-224ENST00000584083 GDF6Q6KF10 455 aaPredicted RBP23.38■■□□□ 1.33
SS18-224ENST00000584083 PSRC1Q6PGN9 363 aaPredicted RBP23.38■■□□□ 1.33
SS18-224ENST00000584083 C16orf59Q7L2K0 433 aa23.38■■□□□ 1.33
SS18-224ENST00000584083 DEFB123Q8N688 67 aa23.38■■□□□ 1.33
SS18-224ENST00000584083 GIMAP8Q8ND71 665 aaPredicted RBP23.38■■□□□ 1.33
SS18-224ENST00000584083 PGBD1Q96JS3 809 aa23.38■■□□□ 1.33
SS18-224ENST00000584083 SENP7Q9BQF6 1050 aa23.38■■□□□ 1.33
SS18-224ENST00000584083 SLC26A6Q9BXS9 759 aa23.38■■□□□ 1.33
SS18-224ENST00000584083 HDAC6Q9UBN7 1215 aa23.38■■□□□ 1.33
SS18-224ENST00000584083 HAS3O00219 553 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 PPFIA3O75145 1194 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 ITGB5P18084 799 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 SP4Q02446 784 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 MTMR1Q13613 665 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 ZNF365Q70YC5 407 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 RETREG2Q8NC44 543 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 CCDC12Q8WUD4 166 aaPredicted RBP23.37■■□□□ 1.33
SS18-224ENST00000584083 SCLYQ96I15 445 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 ANO3Q9BYT9 981 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 TMEM260Q9NX78 707 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 UBIAD1Q9Y5Z9 338 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 SZT2Q5T011 3432 aa23.37■■□□□ 1.33
SS18-224ENST00000584083 EIF5BO60841 1220 aaKnown RBP23.36■■□□□ 1.33
SS18-224ENST00000584083 IFNAR1P17181 557 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms