RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TTLL4Q14679 1199 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 SAFBQ15424 915 aaKnown RBP eCLIP13.53□□□□□ -0.24
LDLR-212ENST00000560467 PPP2R2DQ66LE6 453 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 IQSEC1Q6DN90 963 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 NSUN7Q8NE18 718 aaKnown RBP13.53□□□□□ -0.24
LDLR-212ENST00000560467 PPP1R13LQ8WUF5 828 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 NECAB3Q96P71 396 aaPredicted RBP13.53□□□□□ -0.24
LDLR-212ENST00000560467 SLC26A6Q9BXS9 759 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 VTA1Q9NP79 307 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 SEC63Q9UGP8 760 aaKnown RBP13.53□□□□□ -0.24
LDLR-212ENST00000560467 LRRC37A2A6NM11 1700 aa13.53□□□□□ -0.24
LDLR-212ENST00000560467 KLRF2D3W0D1 207 aa13.52□□□□□ -0.25
LDLR-212ENST00000560467 NFIBO00712 420 aa13.52□□□□□ -0.25
LDLR-212ENST00000560467 DEXIO95424 95 aa13.52□□□□□ -0.25
LDLR-212ENST00000560467 ICAM1P05362 532 aa13.52□□□□□ -0.25
LDLR-212ENST00000560467 ATP2A2P16615 1042 aaKnown RBP13.52□□□□□ -0.25
LDLR-212ENST00000560467 SLC16A2P36021 539 aa13.52□□□□□ -0.25
LDLR-212ENST00000560467 GNL2Q13823 731 aaKnown RBP13.52□□□□□ -0.25
LDLR-212ENST00000560467 BAATQ14032 418 aaPredicted RBP13.52□□□□□ -0.25
LDLR-212ENST00000560467 TTBK2Q6IQ55 1244 aa13.52□□□□□ -0.25
LDLR-212ENST00000560467 TMTC3Q6ZXV5 915 aa13.52□□□□□ -0.25
LDLR-212ENST00000560467 CCDC82Q8N4S0 544 aa13.52□□□□□ -0.25
LDLR-212ENST00000560467 MORC4Q8TE76 937 aa13.52□□□□□ -0.25
LDLR-212ENST00000560467 RRP36Q96EU6 259 aaKnown RBP13.52□□□□□ -0.25
LDLR-212ENST00000560467 RNF26Q9BY78 433 aaPredicted RBP13.52□□□□□ -0.25
LDLR-212ENST00000560467 Q9Y3F1 56 aa13.52□□□□□ -0.25
LDLR-212ENST00000560467 BDP1A6H8Y1 2624 aa13.52□□□□□ -0.25
LDLR-212ENST00000560467 RFXAPO00287 272 aa13.51□□□□□ -0.25
LDLR-212ENST00000560467 MYL3P08590 195 aa13.51□□□□□ -0.25
LDLR-212ENST00000560467 TFF2Q03403 129 aa13.51□□□□□ -0.25
LDLR-212ENST00000560467 DUSP28Q4G0W2 176 aa13.51□□□□□ -0.25
LDLR-212ENST00000560467 DEFB128Q7Z7B8 93 aa13.51□□□□□ -0.25
LDLR-212ENST00000560467 RPUSD2Q8IZ73 545 aaKnown RBP13.51□□□□□ -0.25
LDLR-212ENST00000560467 RGS22Q8NE09 1264 aa13.51□□□□□ -0.25
LDLR-212ENST00000560467 SMARCC2Q8TAQ2 1214 aa13.51□□□□□ -0.25
LDLR-212ENST00000560467 C8orf76Q96K31 380 aa13.51□□□□□ -0.25
LDLR-212ENST00000560467 SEZ6LQ9BYH1 1024 aa13.51□□□□□ -0.25
LDLR-212ENST00000560467 RANBP17Q9H2T7 1088 aaKnown RBP13.51□□□□□ -0.25
LDLR-212ENST00000560467 PCDHA11Q9Y5I1 949 aa13.51□□□□□ -0.25
LDLR-212ENST00000560467 V9GY48 417 aaPredicted RBP13.51□□□□□ -0.25
LDLR-212ENST00000560467 MYH4Q9Y623 1939 aa13.51□□□□□ -0.25
LDLR-212ENST00000560467 NID2Q14112 1375 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 FRMPD2Q68DX3 1309 aaPredicted RBP13.5□□□□□ -0.25
LDLR-212ENST00000560467 STK36Q9NRP7 1315 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 VPS37CA5D8V6 355 aaPredicted RBP13.5□□□□□ -0.25
LDLR-212ENST00000560467 PALM3A6NDB9 673 aaPredicted RBP13.5□□□□□ -0.25
LDLR-212ENST00000560467 EPOPA6NHQ4 379 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 PRPF3O43395 683 aaKnown RBP13.5□□□□□ -0.25
LDLR-212ENST00000560467 STX6O43752 255 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 CA3P07451 260 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 PDHBP11177 359 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 CDC27P30260 824 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 ALDH5A1P51649 535 aaPredicted RBP13.5□□□□□ -0.25
LDLR-212ENST00000560467 PURAQ00577 322 aaKnown RBP13.5□□□□□ -0.25
LDLR-212ENST00000560467 SLC30A10Q6XR72 485 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 CCDC12Q8WUD4 166 aaPredicted RBP13.5□□□□□ -0.25
LDLR-212ENST00000560467 ALG1Q9BT22 464 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 WDR11Q9BZH6 1224 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 CERS4Q9HA82 394 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 BRMS1Q9HCU9 246 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 GPCPD1Q9NPB8 672 aa13.5□□□□□ -0.25
LDLR-212ENST00000560467 JAK2O60674 1132 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 ARHGEF15O94989 841 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 SYT1P21579 422 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 KCNQ1P51787 676 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 ZNF543Q08ER8 600 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 FAM47CQ5HY64 1035 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 SYDE2Q5VT97 1194 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 OR6J1Q8NGC5 347 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 PHKBQ93100 1093 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 GBP4Q96PP9 640 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 VAT1LQ9HCJ6 419 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 POLR3EQ9NVU0 708 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 ADD3Q9UEY8 706 aaKnown RBP13.49□□□□□ -0.25
LDLR-212ENST00000560467 MAD2L2Q9UI95 211 aa13.49□□□□□ -0.25
LDLR-212ENST00000560467 RBM47A0AV96 593 aaKnown RBP13.48□□□□□ -0.25
LDLR-212ENST00000560467 GOLGA6L22H0YM25 854 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 PFKMP08237 780 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 GOLGA8HP0CJ92 632 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 CALML3P27482 149 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 CPT1AP50416 773 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 SKIV2LQ15477 1246 aaKnown RBP13.48□□□□□ -0.25
LDLR-212ENST00000560467 NBPF20Q3BBV1 942 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 KRT40Q6A162 431 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 MCTP1Q6DN14 999 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 BTNL9Q6UXG8 535 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 FAM177A1Q8N128 213 aaPredicted RBP13.48□□□□□ -0.25
LDLR-212ENST00000560467 CLEC4DQ8WXI8 215 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 COPS5Q92905 334 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 MTG1Q9BT17 334 aaPredicted RBP13.48□□□□□ -0.25
LDLR-212ENST00000560467 SPZ1Q9BXG8 430 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 FAM217BQ9NTX9 383 aaPredicted RBP13.48□□□□□ -0.25
LDLR-212ENST00000560467 PNMA2Q9UL42 364 aa13.48□□□□□ -0.25
LDLR-212ENST00000560467 hCG_1984214I3L0E3 225 aa13.47□□□□□ -0.25
LDLR-212ENST00000560467 PLEKHA8P1O95397 391 aa13.47□□□□□ -0.25
LDLR-212ENST00000560467 CTDNEP1O95476 244 aa13.47□□□□□ -0.25
LDLR-212ENST00000560467 SUPT20HL2P0C7V6 817 aa13.47□□□□□ -0.25
LDLR-212ENST00000560467 SNHG28P0DPA3 235 aa13.47□□□□□ -0.25
LDLR-212ENST00000560467 ZSCAN22P10073 491 aaPredicted RBP13.47□□□□□ -0.25
LDLR-212ENST00000560467 BMP1P13497 986 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms