RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 UBE2SQ16763 222 aa17.33■□□□□ 0.36
USP39-217ENST00000491659 MYSM1Q5VVJ2 828 aa17.33■□□□□ 0.36
USP39-217ENST00000491659 PSRC1Q6PGN9 363 aaPredicted RBP17.33■□□□□ 0.36
USP39-217ENST00000491659 FBXL16Q8N461 479 aa17.33■□□□□ 0.36
USP39-217ENST00000491659 SPATA33Q96N06 139 aa17.33■□□□□ 0.36
USP39-217ENST00000491659 MLXIPQ9HAP2 919 aa17.33■□□□□ 0.36
USP39-217ENST00000491659 RTEL1Q9NZ71 1219 aa17.33■□□□□ 0.36
USP39-217ENST00000491659 NOD1Q9Y239 953 aa17.33■□□□□ 0.36
USP39-217ENST00000491659 UMODL1Q5DID0 1318 aa17.32■□□□□ 0.36
USP39-217ENST00000491659 ZNF286BP0CG31 522 aa17.32■□□□□ 0.36
USP39-217ENST00000491659 ICAM3P32942 547 aa17.32■□□□□ 0.36
USP39-217ENST00000491659 FUT2Q10981 343 aa17.32■□□□□ 0.36
USP39-217ENST00000491659 NEDD9Q14511 834 aa17.32■□□□□ 0.36
USP39-217ENST00000491659 NLRX1Q86UT6 975 aa17.32■□□□□ 0.36
USP39-217ENST00000491659 TEX2Q8IWB9 1127 aa17.32■□□□□ 0.36
USP39-217ENST00000491659 USP26Q9BXU7 913 aa17.32■□□□□ 0.36
USP39-217ENST00000491659 AGXT2Q9BYV1 514 aa17.32■□□□□ 0.36
USP39-217ENST00000491659 V9GY48 417 aaPredicted RBP17.32■□□□□ 0.36
USP39-217ENST00000491659 STXBP3O00186 592 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 NOP56O00567 594 aaKnown RBP17.31■□□□□ 0.36
USP39-217ENST00000491659 CYP2C9P11712 490 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 PSEN2P49810 448 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 ADCY7P51828 1080 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 CCL23P55773 120 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 SP2Q02086 613 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 MFSD10Q14728 455 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 RUFY3Q7L099 469 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 PPP1R13LQ8WUF5 828 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 KAT2BQ92831 832 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.31■□□□□ 0.362e-19■■□□□ 13.5
USP39-217ENST00000491659 GLT8D2Q9H1C3 349 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 IL23AQ9NPF7 189 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 FAM217BQ9NTX9 383 aaPredicted RBP17.31■□□□□ 0.36
USP39-217ENST00000491659 CYP46A1Q9Y6A2 500 aa17.31■□□□□ 0.36
USP39-217ENST00000491659 SPATA31C2B4DYI2 1134 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 PPFIA4O75335 1185 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 F2P00734 622 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 ACRP10323 421 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 HOXD8P13378 290 aaPredicted RBP17.3■□□□□ 0.36
USP39-217ENST00000491659 ADD1P35611 737 aaKnown RBP17.3■□□□□ 0.36
USP39-217ENST00000491659 HSDL1Q3SXM5 330 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 METTL7BQ6UX53 244 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 SESTD1Q86VW0 696 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 DEFB123Q8N688 67 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 CCDC155Q8N6L0 562 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 C7orf31Q8N865 590 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 GPRASP2Q96D09 838 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 CDHR1Q96JP9 859 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 ALG1Q9BT22 464 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 WNT8AQ9H1J5 351 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 ZSWIM6Q9HCJ5 1215 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 RIC8AQ9NPQ8 531 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 BARHL2Q9NY43 387 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 PCDHA6Q9UN73 950 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 PCDHA8Q9Y5H6 950 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 LAMA3Q16787 3333 aa17.3■□□□□ 0.36
USP39-217ENST00000491659 SMAD3P84022 425 aaKnown RBP17.29■□□□□ 0.36
USP39-217ENST00000491659 AKAP17AQ02040 695 aaKnown RBP17.29■□□□□ 0.36
USP39-217ENST00000491659 SEMA3FQ13275 785 aa17.29■□□□□ 0.36
USP39-217ENST00000491659 BFSP2Q13515 415 aa17.29■□□□□ 0.36
USP39-217ENST00000491659 PTGISQ16647 500 aa17.29■□□□□ 0.36
USP39-217ENST00000491659 PFKFB3Q16875 520 aaPredicted RBP17.29■□□□□ 0.36
USP39-217ENST00000491659 KIAA0753Q2KHM9 967 aa17.29■□□□□ 0.36
USP39-217ENST00000491659 TMEM240Q5SV17 173 aa17.29■□□□□ 0.36
USP39-217ENST00000491659 TYW1BQ6NUM6 668 aa17.29■□□□□ 0.36
USP39-217ENST00000491659 CYFIP1Q7L576 1253 aa17.29■□□□□ 0.36
USP39-217ENST00000491659 GIMAP8Q8ND71 665 aaPredicted RBP17.29■□□□□ 0.36
USP39-217ENST00000491659 TM6SF1Q9BZW5 370 aa17.29■□□□□ 0.36
USP39-217ENST00000491659 MTIF3Q9H2K0 278 aaKnown RBP17.29■□□□□ 0.36
USP39-217ENST00000491659 SCN5AQ14524 2016 aa17.29■□□□□ 0.36
USP39-217ENST00000491659 SMCO2A6NFE2 343 aa17.28■□□□□ 0.36
USP39-217ENST00000491659 PITPNM1O00562 1244 aa17.28■□□□□ 0.36
USP39-217ENST00000491659 FOSP01100 380 aaPredicted RBP17.28■□□□□ 0.36
USP39-217ENST00000491659 SCG2P13521 617 aa17.28■□□□□ 0.36
USP39-217ENST00000491659 AP3B2Q13367 1082 aa17.28■□□□□ 0.36
USP39-217ENST00000491659 ZNF697Q5TEC3 545 aa17.28■□□□□ 0.36
USP39-217ENST00000491659 GDF6Q6KF10 455 aaPredicted RBP17.28■□□□□ 0.36
USP39-217ENST00000491659 Q7L0L9 218 aa17.28■□□□□ 0.36
USP39-217ENST00000491659 RPUSD2Q8IZ73 545 aaKnown RBP17.28■□□□□ 0.36
USP39-217ENST00000491659 RETREG2Q8NC44 543 aa17.28■□□□□ 0.36
USP39-217ENST00000491659 CCDC12Q8WUD4 166 aaPredicted RBP17.28■□□□□ 0.36
USP39-217ENST00000491659 SCLYQ96I15 445 aa17.28■□□□□ 0.36
USP39-217ENST00000491659 SENP7Q9BQF6 1050 aa17.28■□□□□ 0.36
USP39-217ENST00000491659 GTF2IRD1Q9UHL9 959 aa17.28■□□□□ 0.36
USP39-217ENST00000491659 SZT2Q5T011 3432 aa17.28■□□□□ 0.36
USP39-217ENST00000491659 HAS3O00219 553 aa17.27■□□□□ 0.36
USP39-217ENST00000491659 EIF5BO60841 1220 aaKnown RBP17.27■□□□□ 0.36
USP39-217ENST00000491659 LGALS2P05162 132 aa17.27■□□□□ 0.36
USP39-217ENST00000491659 EVCP57679 992 aa17.27■□□□□ 0.36
USP39-217ENST00000491659 MTMR1Q13613 665 aa17.27■□□□□ 0.36
USP39-217ENST00000491659 FAM109BQ6ICB4 259 aaPredicted RBP17.27■□□□□ 0.36
USP39-217ENST00000491659 ZNF365Q70YC5 407 aa17.27■□□□□ 0.36
USP39-217ENST00000491659 C16orf59Q7L2K0 433 aa17.27■□□□□ 0.36
USP39-217ENST00000491659 CAGE1Q8TC20 777 aa17.27■□□□□ 0.36
USP39-217ENST00000491659 ANO3Q9BYT9 981 aa17.27■□□□□ 0.36
USP39-217ENST00000491659 UPF3BQ9BZI7 483 aaKnown RBP17.27■□□□□ 0.36
USP39-217ENST00000491659 HDAC6Q9UBN7 1215 aa17.27■□□□□ 0.36
USP39-217ENST00000491659 UBIAD1Q9Y5Z9 338 aa17.27■□□□□ 0.36
USP39-217ENST00000491659 TRIP12Q14669 1992 aaPredicted RBP17.26■□□□□ 0.35
USP39-217ENST00000491659 PRPF3O43395 683 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms