RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	F2	P00734	622 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	MUT	P22033	750 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	CCND3	P30281	292 aa	Predicted RBP	5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	CCT2	P78371	535 aa	Known RBP	5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	ARHGAP4	P98171	946 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	MTMR1	Q13613	665 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	TRIM29	Q14134	588 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	NONO	Q15233	471 aa	Known RBP eCLIP	5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	LRRC41	Q15345	812 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	SAFB	Q15424	915 aa	Known RBP eCLIP	5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	CELF3	Q5SZQ8	465 aa	Known RBP	5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	MYSM1	Q5VVJ2	828 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	NFRKB	Q6P4R8	1299 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	USP17L6P	Q6QN14	398 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	B3GNT9	Q6UX72	402 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	ANKRD33	Q7Z3H0	272 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	TLK2	Q86UE8	772 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	SMAP1	Q8IYB5	467 aa	Predicted RBP	5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	CMTR1	Q8N1G2	835 aa	Known RBP	5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	TBC1D5	Q92609	795 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	FAM20A	Q96MK3	541 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	MXRA8	Q9BRK3	442 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	KATNAL1	Q9BW62	490 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	WDR11	Q9BZH6	1224 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	PPME1	Q9Y570	386 aa		5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	TNRC18	O15417	2968 aa	Predicted RBP	5.8	□□□□□ -1.48
HDAC6-223	ENST00000480525	TRIP12	Q14669	1992 aa	Predicted RBP	5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	IGKV6D-21	A0A0A0MT36	114 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525		A0A1W2PPC1	479 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	HAS3	O00219	553 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	ATG7	O95352	703 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	LARGE1	O95461	756 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	TXN	P10599	105 aa	Known RBP	5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	KCNA2	P16389	499 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	SMPD1	P17405	629 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	ITGB5	P18084	799 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	EIF2AK2	P19525	551 aa	Known RBP	5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	UBA1	P22314	1058 aa	Known RBP	5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	HOXA13	P31271	388 aa	Predicted RBP	5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	SFN	P31947	248 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	KRT2	P35908	639 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	CDK7	P50613	346 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	ACLY	P53396	1101 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	NLRP5	P59047	1200 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	SNAP25	P60880	206 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	PURA	Q00577	322 aa	Known RBP	5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	KRT76	Q01546	638 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	ARHGAP1	Q07960	439 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	TRIM32	Q13049	653 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	FSCN1	Q16658	493 aa	Known RBP	5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	DGKD	Q16760	1214 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	ZNF746	Q6NUN9	644 aa	Predicted RBP	5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	SAMD1	Q6SPF0	538 aa	Predicted RBP	5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	PLPPR4	Q7Z2D5	763 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	BRAP	Q7Z569	592 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	NEK8	Q86SG6	692 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	RPAIN	Q86UA6	219 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	FBXO16	Q8IX29	292 aa	Predicted RBP	5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	SLFN12	Q8IYM2	578 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	CCDC82	Q8N4S0	544 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	AFAP1L1	Q8TED9	768 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	LENG9	Q96B70	501 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	GLT1D1	Q96MS3	346 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	ALG1	Q9BT22	464 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	AP5M1	Q9H0R1	490 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	C11orf49	Q9H6J7	331 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	KCNH7	Q9NS40	1196 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	ZHX1	Q9UKY1	873 aa	Predicted RBP	5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	STK24	Q9Y6E0	443 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525	MRVI1	Q9Y6F6	885 aa		5.79	□□□□□ -1.48
HDAC6-223	ENST00000480525		A0A0U1RQG5	324 aa	Predicted RBP	5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	CCDC194	A0A1B0GVG4	234 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	POTEF	A5A3E0	1075 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	IPO5	O00410	1097 aa	Known RBP	5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	ADCY6	O43306	1168 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	DKC1	O60832	514 aa	Known RBP eCLIP	5.78	□□□□□ -1.48	3e-10	■■■■■ 48.8
HDAC6-223	ENST00000480525	LGR5	O75473	907 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	BMP15	O95972	392 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	TFRC	P02786	760 aa	Known RBP	5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	MMP3	P08254	477 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	SUPT20HL2	P0C7V6	817 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	TAL1	P17542	331 aa	Predicted RBP	5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	PRPH	P41219	470 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	ADCYAP1R1	P41586	468 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	JAK3	P52333	1124 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	SEMA3F	Q13275	785 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	RILPL1	Q5EBL4	403 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	KRT40	Q6A162	431 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	ATL3	Q6DD88	541 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	FCHSD1	Q86WN1	690 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	NOSTRIN	Q8IVI9	506 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	DIS3L2	Q8IYB7	885 aa	Known RBP	5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	FAM184A	Q8NB25	1140 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	IL31RA	Q8NI17	732 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	NEK9	Q8TD19	979 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	SLC5A5	Q92911	643 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	C8orf76	Q96K31	380 aa		5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	MTG1	Q9BT17	334 aa	Predicted RBP	5.78	□□□□□ -1.48
HDAC6-223	ENST00000480525	KCNMB3	Q9NPA1	279 aa		5.78	□□□□□ -1.48

Retrieved 100 of 20,778 RNA–protein pairs in 58 ms