RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 METTL7BQ6UX53 244 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 PPTC7Q8NI37 304 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 MLXIPQ9HAP2 919 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 A6NJR5 290 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 DGKDQ16760 1214 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 CELF3Q5SZQ8 465 aaKnown RBP12.18□□□□□ -0.46
UBR4-208ENST00000459947 JAKMIP3Q5VZ66 844 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 PAWRQ96IZ0 340 aaKnown RBP12.18□□□□□ -0.46
UBR4-208ENST00000459947 ACLYP53396 1101 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 MTMR1Q13613 665 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 SNX17Q15036 470 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 HSCBQ8IWL3 235 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 TMX3Q96JJ7 454 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 PURBQ96QR8 312 aaKnown RBP12.18□□□□□ -0.46
UBR4-208ENST00000459947 STARD7Q9NQZ5 370 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 TBC1D22BQ9NU19 505 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 SMC3Q9UQE7 1217 aa12.18□□□□□ -0.46
UBR4-208ENST00000459947 CTDNEP1O95476 244 aa12.17□□□□□ -0.46
UBR4-208ENST00000459947 INTS4Q96HW7 963 aaKnown RBP12.17□□□□□ -0.46
UBR4-208ENST00000459947 LARGE1O95461 756 aa12.17□□□□□ -0.46
UBR4-208ENST00000459947 TOX2Q96NM4 488 aa12.17□□□□□ -0.46
UBR4-208ENST00000459947 LARP6Q9BRS8 491 aaKnown RBP12.17□□□□□ -0.46
UBR4-208ENST00000459947 PDGFCQ9NRA1 345 aa12.17□□□□□ -0.46
UBR4-208ENST00000459947 NOL7Q9UMY1 257 aaKnown RBP12.17□□□□□ -0.46
UBR4-208ENST00000459947 NOP56O00567 594 aaKnown RBP12.17□□□□□ -0.46
UBR4-208ENST00000459947 PPFIA4O75335 1185 aa12.17□□□□□ -0.46
UBR4-208ENST00000459947 RPLP2P05387 115 aaKnown RBP12.17□□□□□ -0.46
UBR4-208ENST00000459947 HOXD8P13378 290 aaPredicted RBP12.17□□□□□ -0.46
UBR4-208ENST00000459947 ARHGAP1Q07960 439 aa12.17□□□□□ -0.46
UBR4-208ENST00000459947 GJC2Q5T442 439 aaPredicted RBP12.17□□□□□ -0.46
UBR4-208ENST00000459947 PLA2G4DQ86XP0 818 aa12.17□□□□□ -0.46
UBR4-208ENST00000459947 GGPS1O95749 300 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 MMP1P03956 469 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 MRPS9P82933 396 aaKnown RBP12.16□□□□□ -0.46
UBR4-208ENST00000459947 CCSAPQ6IQ19 270 aaPredicted RBP12.16□□□□□ -0.46
UBR4-208ENST00000459947 RDM1Q8NG50 284 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 IL31RAQ8NI17 732 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 ZNF215Q9UL58 517 aaPredicted RBP12.16□□□□□ -0.46
UBR4-208ENST00000459947 MEIS1O00470 390 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 PGK1P00558 417 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 GNL2Q13823 731 aaKnown RBP12.16□□□□□ -0.46
UBR4-208ENST00000459947 KCNA10Q16322 511 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 FOXP1Q9H334 677 aaPredicted RBP12.16□□□□□ -0.46
UBR4-208ENST00000459947 CYP3A7-CYP3A51PA0A087WV96 503 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 A0A1W2PQ45 241 aaPredicted RBP12.16□□□□□ -0.46
UBR4-208ENST00000459947 A0A1W2PQY0 241 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 TBX3O15119 743 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 UBA1P22314 1058 aaKnown RBP12.16□□□□□ -0.46
UBR4-208ENST00000459947 CYP3A7P24462 503 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 TRAPPC10P48553 1259 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 KRT40Q6A162 431 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 NEK8Q86SG6 692 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 PRKAG2Q9UGJ0 569 aa12.16□□□□□ -0.46
UBR4-208ENST00000459947 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.15□□□□□ -0.46
UBR4-208ENST00000459947 DCDC2CA8MYV0 355 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 MMP3P08254 477 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 SUPT20HL2P0C7V6 817 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 KRT76Q01546 638 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 CUL4AQ13619 759 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 CCDC155Q8N6L0 562 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 CRYGNQ8WXF5 182 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 SENP6Q9GZR1 1112 aaPredicted RBP12.15□□□□□ -0.46
UBR4-208ENST00000459947 K7ELQ4 463 aaPredicted RBP12.15□□□□□ -0.46
UBR4-208ENST00000459947 BAG4O95429 457 aaKnown RBP12.15□□□□□ -0.46
UBR4-208ENST00000459947 ASGR1P07306 291 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 MYL3P08590 195 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 MNX1P50219 401 aaPredicted RBP12.15□□□□□ -0.46
UBR4-208ENST00000459947 Q4G0T1 1027 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 MYSM1Q5VVJ2 828 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 SLC39A5Q6ZMH5 540 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 FAM43BQ6ZT52 329 aaPredicted RBP12.15□□□□□ -0.46
UBR4-208ENST00000459947 VTI1AQ96AJ9 217 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 SPATA33Q96N06 139 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 RIT2Q99578 217 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 EVI5O60447 810 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 FDPSP14324 419 aaKnown RBP12.15□□□□□ -0.46
UBR4-208ENST00000459947 NFRKBQ6P4R8 1299 aa12.15□□□□□ -0.46
UBR4-208ENST00000459947 DKC1O60832 514 aaKnown RBP eCLIP12.14□□□□□ -0.47
UBR4-208ENST00000459947 MYCNP04198 464 aaPredicted RBP12.14□□□□□ -0.47
UBR4-208ENST00000459947 SLC26A2P50443 739 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 ANO1Q5XXA6 986 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 PPP4R3AQ6IN85 833 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 SESTD1Q86VW0 696 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 FBXO18Q8NFZ0 1043 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 MBOAT7Q96N66 472 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 TMEM260Q9NX78 707 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 M0R2N6 131 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 ARVCFO00192 962 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 RTP1P59025 263 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 FAM160B1Q5W0V3 765 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 SMAP1Q8IYB5 467 aaPredicted RBP12.14□□□□□ -0.47
UBR4-208ENST00000459947 SEPT1Q8WYJ6 367 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 AGO4Q9HCK5 861 aaKnown RBP12.14□□□□□ -0.47
UBR4-208ENST00000459947 SFNP31947 248 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 ZNF746Q6NUN9 644 aaPredicted RBP12.14□□□□□ -0.47
UBR4-208ENST00000459947 DIS3L2Q8IYB7 885 aaKnown RBP12.14□□□□□ -0.47
UBR4-208ENST00000459947 TBCKQ8TEA7 893 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 AFG1LQ8WV93 481 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 DPF3Q92784 378 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 FAM20AQ96MK3 541 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms