RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PPP1R13LQ8WUF5 828 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 GPKOWQ92917 476 aaPredicted RBP eCLIP22.34■■□□□ 1.17
USP40-207ENST00000450940 ZFP91Q96JP5 570 aaPredicted RBP22.34■■□□□ 1.17
USP40-207ENST00000450940 CTAGE1Q96RT6 745 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 PSTPIP2Q9H939 334 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 SCN5AQ14524 2016 aa22.34■■□□□ 1.17
USP40-207ENST00000450940 TANC1Q9C0D5 1861 aa22.33■■□□□ 1.17
USP40-207ENST00000450940 ZBTB43O43298 467 aa22.33■■□□□ 1.17
USP40-207ENST00000450940 GNPTABQ3T906 1256 aa22.33■■□□□ 1.17
USP40-207ENST00000450940 TEX2Q8IWB9 1127 aa22.33■■□□□ 1.17
USP40-207ENST00000450940 CCDC82Q8N4S0 544 aa22.33■■□□□ 1.17
USP40-207ENST00000450940 SPATA33Q96N06 139 aa22.33■■□□□ 1.17
USP40-207ENST00000450940 TTYH1Q9H313 450 aaPredicted RBP22.33■■□□□ 1.17
USP40-207ENST00000450940 CNTNAP5Q8WYK1 1306 aa22.32■■□□□ 1.16
USP40-207ENST00000450940 hCG_1642624A0A1W2PR95 340 aa22.32■■□□□ 1.16
USP40-207ENST00000450940 PSEN2P49810 448 aa22.32■■□□□ 1.16
USP40-207ENST00000450940 SEMA3FQ13275 785 aa22.32■■□□□ 1.16
USP40-207ENST00000450940 FBXL16Q8N461 479 aa22.32■■□□□ 1.16
USP40-207ENST00000450940 SCLYQ96I15 445 aa22.32■■□□□ 1.16
USP40-207ENST00000450940 KATNAL1Q9BW62 490 aa22.32■■□□□ 1.16
USP40-207ENST00000450940 FAM217BQ9NTX9 383 aaPredicted RBP22.32■■□□□ 1.16
USP40-207ENST00000450940 SNX14Q9Y5W7 946 aa22.32■■□□□ 1.16
USP40-207ENST00000450940 DOCK5Q9H7D0 1870 aa22.32■■□□□ 1.16
USP40-207ENST00000450940 FIBPO43427 364 aa22.31■■□□□ 1.16
USP40-207ENST00000450940 EPB41L2O43491 1005 aaKnown RBP22.31■■□□□ 1.16
USP40-207ENST00000450940 REC8O95072 547 aa22.31■■□□□ 1.16
USP40-207ENST00000450940 NEFLP07196 543 aa22.31■■□□□ 1.16
USP40-207ENST00000450940 PFKMP08237 780 aa22.31■■□□□ 1.16
USP40-207ENST00000450940 RFC2P35250 354 aa22.31■■□□□ 1.16
USP40-207ENST00000450940 PTGISQ16647 500 aa22.31■■□□□ 1.16
USP40-207ENST00000450940 RTN1Q16799 776 aa22.31■■□□□ 1.16
USP40-207ENST00000450940 GDF6Q6KF10 455 aaPredicted RBP22.31■■□□□ 1.16
USP40-207ENST00000450940 BCAS3Q9H6U6 928 aa22.31■■□□□ 1.16
USP40-207ENST00000450940 MLXIPQ9HAP2 919 aa22.31■■□□□ 1.16
USP40-207ENST00000450940 CXXC1Q9P0U4 656 aaPredicted RBP22.31■■□□□ 1.16
USP40-207ENST00000450940 GTF2IRD1Q9UHL9 959 aa22.31■■□□□ 1.16
USP40-207ENST00000450940 KLF18A0A0U1RQI7 1052 aa22.3■■□□□ 1.16
USP40-207ENST00000450940 RBL2Q08999 1139 aa22.3■■□□□ 1.16
USP40-207ENST00000450940 BFSP2Q13515 415 aa22.3■■□□□ 1.16
USP40-207ENST00000450940 NEDD9Q14511 834 aa22.3■■□□□ 1.16
USP40-207ENST00000450940 MFSD10Q14728 455 aa22.3■■□□□ 1.16
USP40-207ENST00000450940 KIAA0753Q2KHM9 967 aa22.3■■□□□ 1.16
USP40-207ENST00000450940 FAM161BQ96MY7 647 aa22.3■■□□□ 1.16
USP40-207ENST00000450940 SENP7Q9BQF6 1050 aa22.3■■□□□ 1.16
USP40-207ENST00000450940 C16orf70Q9BSU1 422 aa22.3■■□□□ 1.16
USP40-207ENST00000450940 MTIF3Q9H2K0 278 aaKnown RBP22.3■■□□□ 1.16
USP40-207ENST00000450940 RTEL1Q9NZ71 1219 aa22.3■■□□□ 1.16
USP40-207ENST00000450940 HDAC6Q9UBN7 1215 aa22.3■■□□□ 1.16
USP40-207ENST00000450940 IQCF3P0C7M6 154 aa22.29■■□□□ 1.16
USP40-207ENST00000450940 ZNF286BP0CG31 522 aa22.29■■□□□ 1.16
USP40-207ENST00000450940 DNAJB2P25686 324 aa22.29■■□□□ 1.16
USP40-207ENST00000450940 METTL7BQ6UX53 244 aa22.29■■□□□ 1.16
USP40-207ENST00000450940 C7orf31Q8N865 590 aa22.29■■□□□ 1.16
USP40-207ENST00000450940 RETREG2Q8NC44 543 aa22.29■■□□□ 1.16
USP40-207ENST00000450940 CAGE1Q8TC20 777 aa22.29■■□□□ 1.16
USP40-207ENST00000450940 JAKMIP1Q96N16 626 aaKnown RBP22.29■■□□□ 1.16
USP40-207ENST00000450940 AGXT2Q9BYV1 514 aa22.29■■□□□ 1.16
USP40-207ENST00000450940 NOD1Q9Y239 953 aa22.29■■□□□ 1.16
USP40-207ENST00000450940 GBF1Q92538 1859 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 GOLGA8AA7E2F4 631 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 GOLGA8BA8MQT2 603 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 CPA1P15085 419 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 CDC27P30260 824 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 CHMP4BP1P59074 171 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 ERICH6BQ5W0A0 696 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 WWC2Q6AWC2 1192 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 PPP1R18Q6NYC8 613 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 OTOP2Q7RTS6 562 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 HEATR3Q7Z4Q2 680 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 CDX2Q99626 313 aaPredicted RBP22.28■■□□□ 1.16
USP40-207ENST00000450940 ALG1Q9BT22 464 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 V9GY48 417 aaPredicted RBP22.28■■□□□ 1.16
USP40-207ENST00000450940 TET1Q8NFU7 2136 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 CHD9Q3L8U1 2897 aa22.28■■□□□ 1.16
USP40-207ENST00000450940 NID2Q14112 1375 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 GRXCR1A8MXD5 290 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 hCG_1984214I3L0E3 225 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 SORBS3O60504 671 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 UBE2SQ16763 222 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 TYW1BQ6NUM6 668 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 BLOC1S2Q6QNY1 142 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 Q6ZUG5 572 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 NLRX1Q86UT6 975 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 CCDC155Q8N6L0 562 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 ZNF713Q8N859 430 aaPredicted RBP22.27■■□□□ 1.16
USP40-207ENST00000450940 AFAP1L1Q8TED9 768 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 DHX38Q92620 1227 aaKnown RBP22.27■■□□□ 1.16
USP40-207ENST00000450940 GPRASP2Q96D09 838 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 PBX4Q9BYU1 374 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 PCDHA6Q9UN73 950 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 PCDHA8Q9Y5H6 950 aa22.27■■□□□ 1.16
USP40-207ENST00000450940 RPS6KB1P23443 525 aa22.26■■□□□ 1.15
USP40-207ENST00000450940 HOXC8P31273 242 aa22.26■■□□□ 1.15
USP40-207ENST00000450940 CYFIP1Q7L576 1253 aa22.26■■□□□ 1.15
USP40-207ENST00000450940 GIMAP8Q8ND71 665 aaPredicted RBP22.26■■□□□ 1.15
USP40-207ENST00000450940 GPR20Q99678 358 aa22.26■■□□□ 1.15
USP40-207ENST00000450940 USP26Q9BXU7 913 aa22.26■■□□□ 1.15
USP40-207ENST00000450940 RIC8AQ9NPQ8 531 aa22.26■■□□□ 1.15
USP40-207ENST00000450940 UBIAD1Q9Y5Z9 338 aa22.26■■□□□ 1.15
USP40-207ENST00000450940 CCDC196A0A1B0GTZ2 297 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms