RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 B2RBV5 119 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 C22orf46C9J442 243 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 MYO1BO43795 1136 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 THBDP07204 575 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 RPL11P62913 178 aaKnown RBP6.63□□□□□ -1.35
CLK1-203ENST00000409769 SMAD4Q13485 552 aaKnown RBP6.63□□□□□ -1.35
CLK1-203ENST00000409769 CHRNA2Q15822 529 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 RGL3Q3MIN7 710 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 GTF2IRD2BQ6EKJ0 949 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 LRP10Q7Z4F1 713 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 GTF2IRD2Q86UP8 949 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 FAM126BQ8IXS8 530 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 Q8N1Y9 231 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 MRGPRX3Q96LB0 322 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 RBM15Q96T37 977 aaKnown RBP eCLIP6.63□□□□□ -1.35
CLK1-203ENST00000409769 FANCD2Q9BXW9 1451 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 GPRC5CQ9NQ84 441 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 SMPD4Q9NXE4 827 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 SIRPGQ9P1W8 387 aa6.63□□□□□ -1.35
CLK1-203ENST00000409769 TIMM13Q9Y5L4 95 aaPredicted RBP6.63□□□□□ -1.35
CLK1-203ENST00000409769 PDS5BQ9NTI5 1447 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 SGSM2O43147 1006 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 CAPNS1P04632 268 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 HOXC12P31275 282 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 GTF2F1P35269 517 aaKnown RBP eCLIP6.62□□□□□ -1.35
CLK1-203ENST00000409769 ADAM17P78536 824 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 KCNAB2Q13303 367 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 SERINC3Q13530 473 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 SURF1Q15526 300 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 MBLAC2Q68D91 279 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 CD300LDQ6UXZ3 194 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 ST13P5Q8NFI4 369 aaPredicted RBP6.62□□□□□ -1.35
CLK1-203ENST00000409769 DPF3Q92784 378 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 CCDC140Q96MF4 163 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 TRIM55Q9BYV6 548 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 CCDC113Q9H0I3 377 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 TMPRSS5Q9H3S3 457 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 SIT1Q9Y3P8 196 aa6.62□□□□□ -1.35
CLK1-203ENST00000409769 BIVM-ERCC5R4GMW8 1640 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 MROH6A6NGR9 719 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 C9orf118A6NHY6 69 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 CPP00450 1065 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 INSRRP14616 1297 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 SLC10A6Q3KNW5 377 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 MILR1Q7Z6M3 343 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 TEX2Q8IWB9 1127 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 NPLOC4Q8TAT6 608 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 MKL1Q969V6 931 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 PPP1R14AQ96A00 147 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 SGSM3Q96HU1 749 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 DRC1Q96MC2 740 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 C1QTNF3Q9BXJ4 246 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 ZNF652Q9Y2D9 606 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 X6R8D5 127 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 SYNJ1O43426 1573 aa6.61□□□□□ -1.35
CLK1-203ENST00000409769 CEP164Q9UPV0 1460 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 WRNQ14191 1432 aaPredicted RBP eCLIP6.6□□□□□ -1.35
CLK1-203ENST00000409769 CYP7B1O75881 506 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 ITGA1P56199 1179 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 NKX3-2P78367 333 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 PUM1Q14671 1186 aaKnown RBP eCLIP6.6□□□□□ -1.35
CLK1-203ENST00000409769 TESK1Q15569 626 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 ACBD5Q5T8D3 534 aaPredicted RBP6.6□□□□□ -1.35
CLK1-203ENST00000409769 CPZQ66K79 652 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 FRS2Q8WU20 508 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 DIO2Q92813 273 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 YIPF4Q9BSR8 244 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 BTG4Q9NY30 223 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 COA3Q9Y2R0 106 aaPredicted RBP6.6□□□□□ -1.35
CLK1-203ENST00000409769 TOP2BQ02880 1626 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 CUX1P39880 1505 aa6.6□□□□□ -1.35
CLK1-203ENST00000409769 C1QTNF3-AMACRE9PGA6 284 aa6.59□□□□□ -1.35
CLK1-203ENST00000409769 U2SURPO15042 1029 aaKnown RBP6.59□□□□□ -1.35
CLK1-203ENST00000409769 MEFVO15553 781 aaPredicted RBP6.59□□□□□ -1.35
CLK1-203ENST00000409769 SCG5P05408 212 aa6.59□□□□□ -1.35
CLK1-203ENST00000409769 RASGRF1Q13972 1273 aa6.59□□□□□ -1.35
CLK1-203ENST00000409769 INF2Q27J81 1249 aa6.59□□□□□ -1.35
CLK1-203ENST00000409769 TBC1D10BQ4KMP7 808 aaPredicted RBP6.59□□□□□ -1.35
CLK1-203ENST00000409769 PRR31Q5SQ13 230 aa6.59□□□□□ -1.35
CLK1-203ENST00000409769 CEP68Q76N32 757 aa6.59□□□□□ -1.35
CLK1-203ENST00000409769 PLEKHH3Q7Z736 793 aa6.59□□□□□ -1.35
CLK1-203ENST00000409769 TRMT2BQ96GJ1 504 aaKnown RBP6.59□□□□□ -1.35
CLK1-203ENST00000409769 LCORQ96JN0 433 aaPredicted RBP6.59□□□□□ -1.35
CLK1-203ENST00000409769 WRNIP1Q96S55 665 aa6.59□□□□□ -1.35
CLK1-203ENST00000409769 ST7Q9NRC1 585 aa6.59□□□□□ -1.35
CLK1-203ENST00000409769 DNMBPQ6XZF7 1577 aa6.58□□□□□ -1.36
CLK1-203ENST00000409769 THOC2Q8NI27 1593 aaKnown RBP6.58□□□□□ -1.36
CLK1-203ENST00000409769 IQCA1LA6NCM1 817 aa6.58□□□□□ -1.36
CLK1-203ENST00000409769 ITGAVP06756 1048 aa6.58□□□□□ -1.36
CLK1-203ENST00000409769 SV2CQ496J9 727 aa6.58□□□□□ -1.36
CLK1-203ENST00000409769 ZNF227Q86WZ6 799 aa6.58□□□□□ -1.36
CLK1-203ENST00000409769 UBXN4Q92575 508 aa6.58□□□□□ -1.36
CLK1-203ENST00000409769 TMEM169Q96HH4 297 aa6.58□□□□□ -1.36
CLK1-203ENST00000409769 URB2Q14146 1524 aaKnown RBP6.57□□□□□ -1.36
CLK1-203ENST00000409769 TOPBP1Q92547 1522 aa6.57□□□□□ -1.36
CLK1-203ENST00000409769 H7BY64 318 aa6.57□□□□□ -1.36
CLK1-203ENST00000409769 AGRPO00253 132 aa6.57□□□□□ -1.36
CLK1-203ENST00000409769 TXNDC5Q8NBS9 432 aaKnown RBP6.57□□□□□ -1.36
CLK1-203ENST00000409769 LOXL4Q96JB6 756 aa6.57□□□□□ -1.36
CLK1-203ENST00000409769 LRP2BPQ9P2M1 347 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 291.4 ms