RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SMTNP53814 917 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 SEL1L2Q5TEA6 688 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 LRCH2Q5VUJ6 765 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 GUF1Q8N442 669 aaKnown RBP20.36■□□□□ 0.85
USP48-204ENST00000400301 SELENOSQ9BQE4 189 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 AMFRQ9UKV5 643 aa20.36■□□□□ 0.85
USP48-204ENST00000400301 BCRP11274 1271 aa20.35■□□□□ 0.85
USP48-204ENST00000400301 ZNF18P17022 549 aa20.35■□□□□ 0.85
USP48-204ENST00000400301 IBSPP21815 317 aaPredicted RBP20.35■□□□□ 0.85
USP48-204ENST00000400301 BBXQ8WY36 941 aaPredicted RBP20.35■□□□□ 0.85
USP48-204ENST00000400301 MKRN1Q9UHC7 482 aaKnown RBP20.35■□□□□ 0.85
USP48-204ENST00000400301 LRRC53A6NM62 1247 aa20.35■□□□□ 0.85
USP48-204ENST00000400301 RNF40O75150 1001 aa20.35■□□□□ 0.85
USP48-204ENST00000400301 KRT12Q99456 494 aa20.35■□□□□ 0.85
USP48-204ENST00000400301 TNS2Q63HR2 1409 aa20.35■□□□□ 0.85
USP48-204ENST00000400301 AFPP02771 609 aaKnown RBP20.35■□□□□ 0.85
USP48-204ENST00000400301 MIER3Q7Z3K6 550 aa20.35■□□□□ 0.85
USP48-204ENST00000400301 KRT26Q7Z3Y9 468 aa20.35■□□□□ 0.85
USP48-204ENST00000400301 QTRT2Q9H974 415 aaKnown RBP20.35■□□□□ 0.85
USP48-204ENST00000400301 MRPL11Q9Y3B7 192 aaKnown RBP20.35■□□□□ 0.85
USP48-204ENST00000400301 SETD1AO15047 1707 aaKnown RBP20.34■□□□□ 0.85
USP48-204ENST00000400301 EEF2P13639 858 aaKnown RBP20.34■□□□□ 0.85
USP48-204ENST00000400301 KRT5P13647 590 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 HOXA13P31271 388 aaPredicted RBP20.34■□□□□ 0.85
USP48-204ENST00000400301 SEMA3FQ13275 785 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 ODR4Q5SWX8 454 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 PRR5LQ6MZQ0 368 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 ADGRF4Q8IZF3 695 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 EXOC4Q96A65 974 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 RGPD1P0DJD0 1748 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 CLRN2A0PK11 232 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 KRIT1O00522 736 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 GBP2P32456 591 aaPredicted RBP20.34■□□□□ 0.85
USP48-204ENST00000400301 ORC2Q13416 577 aaPredicted RBP20.34■□□□□ 0.85
USP48-204ENST00000400301 SUPT20HQ8NEM7 779 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 AGPAT5Q9NUQ2 364 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 SERPING1P05155 500 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 ADRA2BP18089 450 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 SLC10A5Q5PT55 438 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 BHMT2Q9H2M3 363 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 MLXIPQ9HAP2 919 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 ADAM21Q9UKJ8 722 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 POTEB3A0JP26 581 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 POTECB2RU33 542 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 PRPF6O94906 941 aaKnown RBP20.34■□□□□ 0.85
USP48-204ENST00000400301 COASYQ13057 564 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 PPP1R7Q15435 360 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 POTEBQ6S5H4 581 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 BARGINQ6ZT62 677 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 CPLX4Q7Z7G2 160 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 GIMAP8Q8ND71 665 aaPredicted RBP20.34■□□□□ 0.85
USP48-204ENST00000400301 MTMR4Q9NYA4 1195 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 TRIM10Q9UDY6 481 aa20.34■□□□□ 0.85
USP48-204ENST00000400301 SARSP49591 514 aaKnown RBP20.33■□□□□ 0.85
USP48-204ENST00000400301 TTBK2Q6IQ55 1244 aa20.33■□□□□ 0.85
USP48-204ENST00000400301 DAGLAQ9Y4D2 1042 aa20.33■□□□□ 0.85
USP48-204ENST00000400301 CNTNAP4Q9C0A0 1308 aa20.33■□□□□ 0.85
USP48-204ENST00000400301 SLC7A5Q01650 507 aa20.33■□□□□ 0.84
USP48-204ENST00000400301 CALCOCO2Q13137 446 aa20.33■□□□□ 0.84
USP48-204ENST00000400301 SYDE2Q5VT97 1194 aa20.33■□□□□ 0.84
USP48-204ENST00000400301 CCDC50Q8IVM0 306 aa20.33■□□□□ 0.84
USP48-204ENST00000400301 GOLGA5Q8TBA6 731 aa20.33■□□□□ 0.84
USP48-204ENST00000400301 MAD2L2Q9UI95 211 aa20.33■□□□□ 0.84
USP48-204ENST00000400301 BZW2Q9Y6E2 419 aaKnown RBP20.33■□□□□ 0.84
USP48-204ENST00000400301 EIF3CLB5ME19 914 aaKnown RBP20.33■□□□□ 0.84
USP48-204ENST00000400301 ATP1A1P05023 1023 aaKnown RBP20.33■□□□□ 0.84
USP48-204ENST00000400301 ZSCAN20P17040 1043 aaPredicted RBP20.33■□□□□ 0.84
USP48-204ENST00000400301 UBL4BQ8N7F7 174 aa20.33■□□□□ 0.84
USP48-204ENST00000400301 TBC1D16Q8TBP0 767 aa20.33■□□□□ 0.84
USP48-204ENST00000400301 EIF3CQ99613 913 aaKnown RBP20.33■□□□□ 0.84
USP48-204ENST00000400301 ZMYND12Q9H0C1 365 aa20.33■□□□□ 0.84
USP48-204ENST00000400301 LARSQ9P2J5 1176 aaKnown RBP20.33■□□□□ 0.84
USP48-204ENST00000400301 NALCNQ8IZF0 1738 aa20.33■□□□□ 0.84
USP48-204ENST00000400301 SRGNP10124 158 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 BIRC3Q13489 604 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.32■□□□□ 0.84
USP48-204ENST00000400301 FAM237AA0A1B0GTK4 181 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 HEXIM1O94992 359 aaKnown RBP20.32■□□□□ 0.84
USP48-204ENST00000400301 NPR1P16066 1061 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 FAM186BQ8IYM0 893 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 POLD4Q9HCU8 107 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 A0A087X0B3 334 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 ANO9A1A5B4 782 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 CRKP46108 304 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 ATP1A2P50993 1020 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 GNGT1P63211 74 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 QRICH1Q2TAL8 776 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 CC2D2BQ6DHV5 1058 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 C16orf86Q6ZW13 317 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 SCLT1Q96NL6 688 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 IMPG2Q9BZV3 1241 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 EPB41L5Q9HCM4 733 aa20.32■□□□□ 0.84
USP48-204ENST00000400301 K7ENM7 598 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 BMP6P22004 513 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 RUFY4Q6ZNE9 571 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 PROM2Q8N271 834 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 ALAS1P13196 640 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 HOXA7P31268 230 aaPredicted RBP20.31■□□□□ 0.84
USP48-204ENST00000400301 ACTN2P35609 894 aa20.31■□□□□ 0.84
USP48-204ENST00000400301 VSNL1P62760 191 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 143.1 ms