RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 C2orf69Q8N8R5 385 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 GTF3C2Q8WUA4 911 aaPredicted RBP20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 ZNF408Q9H9D4 720 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 MAN1B1Q9UKM7 699 aa20.4■□□□□ 0.86
CCDC88C-203ENST00000389856 FOXN1O15353 648 aa20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 BCRP11274 1271 aa20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 RPS6P62753 249 aaKnown RBP20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 MORC3Q14149 939 aa20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 PLS1Q14651 629 aa20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 TREML2Q5T2D2 321 aa20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 MOB2Q70IA6 237 aa20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 CNKSR2Q8WXI2 1034 aa20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 LENG9Q96B70 501 aa20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 WDR11Q9BZH6 1224 aa20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 KBTBD4Q9NVX7 518 aa20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 PNMA3Q9UL41 463 aa20.39■□□□□ 0.86
CCDC88C-203ENST00000389856 POTEMA6NI47 508 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 MSH4O15457 936 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 PRR29P0C7W0 189 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 CCT6AP40227 531 aaKnown RBP20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 SV2BQ7L1I2 683 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 GRAMD1CQ8IYS0 662 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 MXRA8Q9BRK3 442 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 GBA2Q9HCG7 927 aaPredicted RBP20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 PYCARDQ9ULZ3 195 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 PFASO15067 1338 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 IGLV3-22A0A075B6J6 115 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 MEIS1O00470 390 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 HYIQ5T013 277 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 ARHGEF16Q5VV41 709 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 RMDN3Q96TC7 470 aa20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 MMTAG2Q9BU76 263 aaKnown RBP20.38■□□□□ 0.85
CCDC88C-203ENST00000389856 TMEM119Q4V9L6 283 aa20.37■□□□□ 0.85
CCDC88C-203ENST00000389856 NAALADL2Q58DX5 795 aa20.37■□□□□ 0.85
CCDC88C-203ENST00000389856 RIOX2Q8IUF8 465 aa20.37■□□□□ 0.85
CCDC88C-203ENST00000389856 SLC5A5Q92911 643 aa20.37■□□□□ 0.85
CCDC88C-203ENST00000389856 WNK4Q96J92 1243 aa20.37■□□□□ 0.85
CCDC88C-203ENST00000389856 ZNF577Q9BSK1 485 aa20.37■□□□□ 0.85
CCDC88C-203ENST00000389856 UQCRHLA0A096LP55 91 aa20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 GAS7O60861 476 aa20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 SLC25A27O95847 323 aa20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 UQCRHP07919 91 aa20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 CETPP11597 493 aa20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 CCND2P30279 289 aa20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 GTF2A2P52657 109 aa20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 LRCH2Q5VUJ6 765 aa20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 MYRIPQ8NFW9 859 aa20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 NSUN6Q8TEA1 469 aaKnown RBP20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 LARP4BQ92615 738 aaKnown RBP20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 RIT2Q99578 217 aa20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 TCEAL9Q9UHQ7 104 aa20.36■□□□□ 0.85
CCDC88C-203ENST00000389856 TRAF5O00463 557 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 CBFA2T2O43439 604 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 STAM2O75886 525 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 RPN1P04843 607 aaKnown RBP20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 POTEIP0CG38 1075 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 POTEJP0CG39 1038 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 ERCC5P28715 1186 aaPredicted RBP20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 MYL5Q02045 173 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 GRB10Q13322 594 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 BAATQ14032 418 aaPredicted RBP20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 KCNB1Q14721 858 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 SLC30A10Q6XR72 485 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 RAD54LQ92698 747 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 PLIN2Q99541 437 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 C7orf25Q9BPX7 421 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 TEKT3Q9BXF9 490 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 ASCC2Q9H1I8 757 aaPredicted RBP20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 PXMP2Q9NR77 195 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 BMP2KQ9NSY1 1161 aaPredicted RBP20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 SLC45A1Q9Y2W3 748 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 B4DLN1 442 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 MUTP22033 750 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 GTF2F1P35269 517 aaKnown RBP eCLIP20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 PPP1R2P41236 205 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 HERVK_113P62684 666 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 UBXN2AP68543 259 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 PGM5Q15124 567 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 ISM2Q6H9L7 571 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 NCAPH2Q6IBW4 605 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 LRRC8AQ8IWT6 810 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 PNMA5Q96PV4 448 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 JADE2Q9NQC1 790 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 KCND1Q9NSA2 647 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 COL20A1Q9P218 1284 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 RIPK3Q9Y572 518 aa20.35■□□□□ 0.85
CCDC88C-203ENST00000389856 MAFGO15525 162 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 EIF2AK2P19525 551 aaKnown RBP20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 RPA1P27694 616 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 PPP2R5CQ13362 524 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 STIM1Q13586 685 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 CUL4BQ13620 913 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 NLRX1Q86UT6 975 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 CCDC150Q8NCX0 1101 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 NEK9Q8TD19 979 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 TAAR1Q96RJ0 339 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 MAP7D2Q96T17 732 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 MPHOSPH6Q99547 160 aaKnown RBP20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 PDCD2LQ9BRP1 358 aa20.34■□□□□ 0.85
CCDC88C-203ENST00000389856 POLR3CQ9BUI4 534 aaPredicted RBP20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms