RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 KRT12Q99456 494 aa10.49□□□□□ -0.73
SF3A3-201ENST00000373019 DENND2AQ9ULE3 1009 aa10.49□□□□□ -0.73
SF3A3-201ENST00000373019 LGALS16A8MUM7 142 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 RAD51CO43502 376 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 HOXC9P31274 260 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 ERVK-9P63128 1117 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 KIAA0753Q2KHM9 967 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 RUFY4Q6ZNE9 571 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 KIAA0825Q8IV33 1275 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 LRRC34Q8IZ02 419 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 LINS1Q8NG48 757 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 STAMQ92783 540 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 PREBQ9HCU5 417 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 KCNQ3O43525 872 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 PARP1P09874 1014 aaKnown RBP10.48□□□□□ -0.73
SF3A3-201ENST00000373019 TATP17735 454 aaPredicted RBP10.48□□□□□ -0.73
SF3A3-201ENST00000373019 PROSER3Q2NL68 480 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 CFAP221Q4G0U5 840 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 CMPK2Q5EBM0 449 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 TLCD1Q96CP7 247 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 ADAM7Q9H2U9 754 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 TRIM33Q9UPN9 1127 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 STK38LQ9Y2H1 464 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 BCL9O00512 1426 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 STK36Q9NRP7 1315 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 ABCC12Q96J65 1359 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 SART1O43290 800 aaKnown RBP10.48□□□□□ -0.73
SF3A3-201ENST00000373019 BNIP1Q12981 228 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 SLC39A6Q13433 755 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 VPS72Q15906 364 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 KCTD19Q17RG1 926 aaPredicted RBP10.48□□□□□ -0.73
SF3A3-201ENST00000373019 TSR1Q2NL82 804 aaKnown RBP10.48□□□□□ -0.73
SF3A3-201ENST00000373019 FAM136AQ96C01 138 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 DTNBP1Q96EV8 351 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 ELAC2Q9BQ52 826 aaKnown RBP10.48□□□□□ -0.73
SF3A3-201ENST00000373019 ISCUQ9H1K1 167 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 PCDHA13Q9Y5I0 950 aa10.48□□□□□ -0.73
SF3A3-201ENST00000373019 CPDO75976 1380 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 ZPR1O75312 459 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 PAK1Q13153 545 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 HLFQ16534 295 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 PBKQ96KB5 322 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 CDCA7Q9BWT1 371 aaPredicted RBP10.47□□□□□ -0.73
SF3A3-201ENST00000373019 FAM217BQ9NTX9 383 aaPredicted RBP10.47□□□□□ -0.73
SF3A3-201ENST00000373019 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.47□□□□□ -0.73
SF3A3-201ENST00000373019 GALNT8Q9NY28 637 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 TOPAZ1Q8N9V7 1692 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 PDS5AQ29RF7 1337 aaKnown RBP10.47□□□□□ -0.73
SF3A3-201ENST00000373019 PSMC4P43686 418 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 DYNC1I2Q13409 638 aaKnown RBP10.47□□□□□ -0.73
SF3A3-201ENST00000373019 IMMTQ16891 758 aaKnown RBP10.47□□□□□ -0.73
SF3A3-201ENST00000373019 RRAGBQ5VZM2 374 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 KSR2Q6VAB6 950 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 NELFBQ8WX92 580 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 MTMR8Q96EF0 704 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 NDNQ99608 321 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 MTRQ99707 1265 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 IFIH1Q9BYX4 1025 aaKnown RBP10.47□□□□□ -0.73
SF3A3-201ENST00000373019 DLGAP2Q9P1A6 1054 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 MAPK8IP1Q9UQF2 711 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 BHMG1C9JSJ3 638 aaPredicted RBP10.47□□□□□ -0.73
SF3A3-201ENST00000373019 CREB3O43889 395 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 CHN1P15882 459 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 CDK17Q00537 523 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 DDX42Q86XP3 938 aaKnown RBP eCLIP10.47□□□□□ -0.73
SF3A3-201ENST00000373019 NBPF15Q8N660 670 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 UTP4Q969X6 686 aaKnown RBP10.47□□□□□ -0.73
SF3A3-201ENST00000373019 KLHL29Q96CT2 875 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 BLZF1Q9H2G9 400 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 ARHGAP20Q9P2F6 1191 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 XDHP47989 1333 aa10.47□□□□□ -0.73
SF3A3-201ENST00000373019 TRIM49BA6NDI0 452 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 OAS1P00973 400 aaKnown RBP10.46□□□□□ -0.73
SF3A3-201ENST00000373019 METAP2P50579 478 aaKnown RBP eCLIP10.46□□□□□ -0.735e-7■■■■■ 29.1
SF3A3-201ENST00000373019 PMS1P54277 932 aaKnown RBP10.46□□□□□ -0.73
SF3A3-201ENST00000373019 COPS2P61201 443 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 APBB1IPQ7Z5R6 666 aaPredicted RBP10.46□□□□□ -0.73
SF3A3-201ENST00000373019 SLC17A8Q8NDX2 589 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 UCMAQ8WVF2 138 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.46□□□□□ -0.73
SF3A3-201ENST00000373019 AATFQ9NY61 560 aaKnown RBP eCLIP10.46□□□□□ -0.73
SF3A3-201ENST00000373019 FBXL5Q9UKA1 691 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 LCA5LO95447 670 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 MMEP08473 750 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 GUCY1A2P33402 732 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 RFX5P48382 616 aaPredicted RBP10.46□□□□□ -0.73
SF3A3-201ENST00000373019 ZNF131P52739 623 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 PTPN12Q05209 780 aaKnown RBP10.46□□□□□ -0.73
SF3A3-201ENST00000373019 KLC1Q07866 573 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 DDB1Q16531 1140 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 DBN1Q16643 649 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 LONP2Q86WA8 852 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 EIF1ADQ8N9N8 165 aaKnown RBP10.46□□□□□ -0.73
SF3A3-201ENST00000373019 OSBP2Q969R2 916 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 AZIN2Q96A70 460 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 PHACTR1Q9C0D0 580 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 CNOT10Q9H9A5 744 aaKnown RBP10.46□□□□□ -0.73
SF3A3-201ENST00000373019 RMI1Q9H9A7 625 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 PAG1Q9NWQ8 432 aa10.46□□□□□ -0.73
SF3A3-201ENST00000373019 PNMA2Q9UL42 364 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms