RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 COL4A3BPQ9Y5P4 624 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 GOLGA8TH3BQL2 631 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 H2AFZP0C0S5 128 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 GOLGA8HP0CJ92 632 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 H2AFVQ71UI9 128 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 DYDC2Q96IM9 177 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 STOML1Q9UBI4 398 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 IRS4O14654 1257 aaPredicted RBP15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 KRT72Q14CN4 511 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 NCAPG2Q86XI2 1143 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 SUPT20HQ8NEM7 779 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 CYTH2Q99418 400 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 MYO1DO94832 1006 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 HSPA4LO95757 839 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 RPN1P04843 607 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 SKAP1Q86WV1 359 aa15.01□□□□□ -0.01
CCDC88A-201ENST00000263630 B4E1Z4 1266 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 TOMM70O94826 608 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 ADAT2Q7Z6V5 191 aaKnown RBP15□□□□□ -0.01
CCDC88A-201ENST00000263630 ANXA13P27216 316 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 NUP62P37198 522 aaPredicted RBP15□□□□□ -0.01
CCDC88A-201ENST00000263630 MYL7Q01449 175 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 KCTD16Q68DU8 428 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 ADALQ6DHV7 355 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 ARMC2Q8NEN0 867 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 DCDC2Q9UHG0 476 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 BRIP1Q9BX63 1249 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 CUEDC2Q9H467 287 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 SOS1Q07889 1333 aaPredicted RBP15□□□□□ -0.01
CCDC88A-201ENST00000263630 PRDM1O75626 825 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 GALNT17Q6IS24 598 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 PARVBQ9HBI1 364 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 PCDHA12Q9UN75 941 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 ARMCX5Q6P1M9 558 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 CENPUQ71F23 418 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 SYT2Q8N9I0 419 aaPredicted RBP15□□□□□ -0.01
CCDC88A-201ENST00000263630 CFTRP13569 1480 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 GOLGA8IPA6NC78 632 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 OSBPL10Q9BXB5 764 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 SLC7A5P2Q9GIP4 190 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 ATP8A2Q9NTI2 1148 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 NLRP4Q96MN2 994 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 NDEL1Q9GZM8 345 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 SLC4A7Q9Y6M7 1214 aa15□□□□□ -0.01
CCDC88A-201ENST00000263630 RNF103-CHMP3A0A140T963 221 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 KPNA7A9QM74 516 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 EFTUD2Q15029 972 aaKnown RBP eCLIP14.99□□□□□ -0.018e-7■■■■□ 19.8
CCDC88A-201ENST00000263630 FMO2Q99518 471 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 SEPT3Q9UH03 358 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 PLS3P13797 630 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 VCAM1P19320 739 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 RASSF7Q02833 373 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 EXOC3L4Q17RC7 722 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 NBPF20Q3BBV1 942 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 HORMAD1Q86X24 394 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 CPXCR1Q8N123 301 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 MAGEB5Q9BZ81 275 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 CSADQ9Y600 493 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 GUCA1CO95843 209 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 ADCK1Q86TW2 530 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 GANCQ8TET4 914 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 OLFML3Q9NRN5 406 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 DMC1Q14565 340 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 RNF219Q5W0B1 726 aaPredicted RBP14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 UIMC1Q96RL1 719 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 SEL1LQ9UBV2 794 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 ANKRD36BQ8N2N9 1353 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 SPARCL1Q14515 664 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 APLFQ8IW19 511 aaPredicted RBP14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 RAB42Q8N4Z0 105 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 ZNF555Q8NEP9 628 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 RNF139Q8WU17 664 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 MAP3K15Q6ZN16 1313 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 GOLGA8JA6NMD2 632 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 KSR1Q8IVT5 923 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 KIF1CO43896 1103 aaKnown RBP14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 SMARCA1P28370 1054 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 DIS3L2Q8IYB7 885 aaKnown RBP14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 CFAP36Q96G28 342 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 MEIS3Q99687 375 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 PPP2R2CQ9Y2T4 447 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 PJA2O43164 708 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 TFAP4Q01664 338 aa14.99□□□□□ -0.01
CCDC88A-201ENST00000263630 TNFAIP1Q13829 316 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 KIAA1841Q6NSI8 718 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 CATSPER3Q86XQ3 398 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 LCMT1Q9UIC8 334 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 PGRMC1O00264 195 aaKnown RBP14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 CDH2P19022 906 aaPredicted RBP14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 CA4P22748 312 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 BASP1P80723 227 aaKnown RBP14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 ANKS3Q6ZW76 656 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 KRT28Q7Z3Y7 464 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 PLD3Q8IV08 490 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 RETREG2Q8NC44 543 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 CALR3Q96L12 384 aaKnown RBP14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 ATP8A1Q9Y2Q0 1164 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 ZNF445P59923 1031 aa14.98□□□□□ -0.01
CCDC88A-201ENST00000263630 MYO1EQ12965 1108 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms