RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 XRRA1Q6P2D8 792 aa23.25■■□□□ 1.31
PTCD3-220ENST00000627371 REXO1Q8N1G1 1221 aaKnown RBP23.25■■□□□ 1.31
PTCD3-220ENST00000627371 TMX3Q96JJ7 454 aa23.25■■□□□ 1.31
PTCD3-220ENST00000627371 ALG1Q9BT22 464 aa23.25■■□□□ 1.31
PTCD3-220ENST00000627371 ANO3Q9BYT9 981 aa23.25■■□□□ 1.31
PTCD3-220ENST00000627371 TMEM260Q9NX78 707 aa23.25■■□□□ 1.31
PTCD3-220ENST00000627371 GNEQ9Y223 722 aaKnown RBP23.25■■□□□ 1.31
PTCD3-220ENST00000627371 ADAMTS3O15072 1205 aa23.24■■□□□ 1.31
PTCD3-220ENST00000627371 STAM2O75886 525 aa23.24■■□□□ 1.31
PTCD3-220ENST00000627371 SMPD1P17405 629 aa23.24■■□□□ 1.31
PTCD3-220ENST00000627371 XBP1P17861 261 aa23.24■■□□□ 1.31
PTCD3-220ENST00000627371 MRPS9P82933 396 aaKnown RBP23.24■■□□□ 1.31
PTCD3-220ENST00000627371 DUSP28Q4G0W2 176 aa23.24■■□□□ 1.31
PTCD3-220ENST00000627371 IFFO2Q5TF58 517 aa23.24■■□□□ 1.31
PTCD3-220ENST00000627371 WDR11Q9BZH6 1224 aa23.24■■□□□ 1.31
PTCD3-220ENST00000627371 SYNRGQ9UMZ2 1314 aa23.24■■□□□ 1.31
PTCD3-220ENST00000627371 RGS19P49795 217 aa23.23■■□□□ 1.31
PTCD3-220ENST00000627371 MNX1P50219 401 aaPredicted RBP23.23■■□□□ 1.31
PTCD3-220ENST00000627371 TTLL4Q14679 1199 aa23.23■■□□□ 1.31
PTCD3-220ENST00000627371 JAKMIP3Q5VZ66 844 aa23.23■■□□□ 1.31
PTCD3-220ENST00000627371 GALNT17Q6IS24 598 aa23.23■■□□□ 1.31
PTCD3-220ENST00000627371 SEPT14Q6ZU15 432 aa23.23■■□□□ 1.31
PTCD3-220ENST00000627371 DAGLBQ8NCG7 672 aa23.23■■□□□ 1.31
PTCD3-220ENST00000627371 ARRDC4Q8NCT1 418 aa23.23■■□□□ 1.31
PTCD3-220ENST00000627371 PGBD1Q96JS3 809 aa23.23■■□□□ 1.31
PTCD3-220ENST00000627371 PCDHA4Q9UN74 947 aa23.23■■□□□ 1.31
PTCD3-220ENST00000627371 DOCK5Q9H7D0 1870 aa23.22■■□□□ 1.31
PTCD3-220ENST00000627371 NKRFO15226 690 aaKnown RBP eCLIP23.22■■□□□ 1.31
PTCD3-220ENST00000627371 ADAMTS4O75173 837 aa23.22■■□□□ 1.31
PTCD3-220ENST00000627371 RGS20O76081 388 aa23.22■■□□□ 1.31
PTCD3-220ENST00000627371 FARP2O94887 1054 aaPredicted RBP23.22■■□□□ 1.31
PTCD3-220ENST00000627371 ARIH2O95376 493 aa23.22■■□□□ 1.31
PTCD3-220ENST00000627371 PGK1P00558 417 aa23.22■■□□□ 1.31
PTCD3-220ENST00000627371 HMGN5P82970 282 aaKnown RBP23.22■■□□□ 1.31
PTCD3-220ENST00000627371 NPY5RQ15761 445 aa23.22■■□□□ 1.31
PTCD3-220ENST00000627371 UBE2Q1Q7Z7E8 422 aa23.22■■□□□ 1.31
PTCD3-220ENST00000627371 TLK2Q86UE8 772 aa23.22■■□□□ 1.31
PTCD3-220ENST00000627371 PHF20Q9BVI0 1012 aa23.22■■□□□ 1.31
PTCD3-220ENST00000627371 UPF3AQ9H1J1 476 aaKnown RBP23.22■■□□□ 1.31
PTCD3-220ENST00000627371 Q9Y3F1 56 aa23.22■■□□□ 1.31
PTCD3-220ENST00000627371 DNM1LO00429 736 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 SREBF1P36956 1147 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 GJA9P57773 515 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 LRRC41Q15345 812 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 GNPTABQ3T906 1256 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 TMEM63BQ5T3F8 832 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 CCDC62Q6P9F0 684 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 RNF180Q86T96 592 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 BLIDQ8IZY5 108 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 RASGRP4Q8TDF6 673 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 ZFP91Q96JP5 570 aaPredicted RBP23.21■■□□□ 1.31
PTCD3-220ENST00000627371 INPP4AQ96PE3 977 aaPredicted RBP23.21■■□□□ 1.31
PTCD3-220ENST00000627371 SPC25Q9HBM1 224 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 KCNJ14Q9UNX9 436 aa23.21■■□□□ 1.31
PTCD3-220ENST00000627371 TXNP10599 105 aaKnown RBP23.2■■□□□ 1.3
PTCD3-220ENST00000627371 CST5P28325 142 aaPredicted RBP23.2■■□□□ 1.3
PTCD3-220ENST00000627371 NKX3-2P78367 333 aa23.2■■□□□ 1.3
PTCD3-220ENST00000627371 GJC2Q5T442 439 aaPredicted RBP23.2■■□□□ 1.3
PTCD3-220ENST00000627371 KCNV1Q6PIU1 500 aa23.2■■□□□ 1.3
PTCD3-220ENST00000627371 DIS3LQ8TF46 1054 aaKnown RBP23.2■■□□□ 1.3
PTCD3-220ENST00000627371 GJB4Q9NTQ9 266 aa23.2■■□□□ 1.3
PTCD3-220ENST00000627371 MRVI1Q9Y6F6 885 aa23.2■■□□□ 1.3
PTCD3-220ENST00000627371 M0R2N6 131 aa23.19■■□□□ 1.3
PTCD3-220ENST00000627371 PTGS1P23219 599 aa23.19■■□□□ 1.3
PTCD3-220ENST00000627371 ICAM3P32942 547 aa23.19■■□□□ 1.3
PTCD3-220ENST00000627371 KLHDC9Q8NEP7 349 aa23.19■■□□□ 1.3
PTCD3-220ENST00000627371 RTEL1Q9NZ71 1219 aa23.19■■□□□ 1.3
PTCD3-220ENST00000627371 DDX41Q9UJV9 622 aaKnown RBP23.19■■□□□ 1.3
PTCD3-220ENST00000627371 ALPK3Q96L96 1907 aa23.18■■□□□ 1.3
PTCD3-220ENST00000627371 MYADML2A6NDP7 307 aa23.18■■□□□ 1.3
PTCD3-220ENST00000627371 KBTBD13C9JR72 458 aa23.18■■□□□ 1.3
PTCD3-220ENST00000627371 CTAGE5O15320 804 aa23.18■■□□□ 1.3
PTCD3-220ENST00000627371 MYCNP04198 464 aaPredicted RBP23.18■■□□□ 1.3
PTCD3-220ENST00000627371 C6orf222P0C671 652 aaPredicted RBP23.18■■□□□ 1.3
PTCD3-220ENST00000627371 TGFB3P10600 412 aa23.18■■□□□ 1.3
PTCD3-220ENST00000627371 ARHGAP4P98171 946 aa23.18■■□□□ 1.3
PTCD3-220ENST00000627371 CRYGNQ8WXF5 182 aa23.18■■□□□ 1.3
PTCD3-220ENST00000627371 PAWRQ96IZ0 340 aaKnown RBP23.18■■□□□ 1.3
PTCD3-220ENST00000627371 AP5M1Q9H0R1 490 aa23.18■■□□□ 1.3
PTCD3-220ENST00000627371 UBIAD1Q9Y5Z9 338 aa23.18■■□□□ 1.3
PTCD3-220ENST00000627371 DYNC1LI2O43237 492 aaPredicted RBP23.17■■□□□ 1.3
PTCD3-220ENST00000627371 FIBPO43427 364 aa23.17■■□□□ 1.3
PTCD3-220ENST00000627371 COL6A1P12109 1028 aa23.17■■□□□ 1.3
PTCD3-220ENST00000627371 TRIM29Q14134 588 aa23.17■■□□□ 1.3
PTCD3-220ENST00000627371 LY6KQ17RY6 165 aa23.17■■□□□ 1.3
PTCD3-220ENST00000627371 NECAB2Q7Z6G3 386 aa23.17■■□□□ 1.3
PTCD3-220ENST00000627371 NLRX1Q86UT6 975 aa23.17■■□□□ 1.3
PTCD3-220ENST00000627371 FAM184AQ8NB25 1140 aa23.17■■□□□ 1.3
PTCD3-220ENST00000627371 OR6J1Q8NGC5 347 aa23.17■■□□□ 1.3
PTCD3-220ENST00000627371 COPS5Q92905 334 aa23.17■■□□□ 1.3
PTCD3-220ENST00000627371 GPRASP2Q96D09 838 aa23.17■■□□□ 1.3
PTCD3-220ENST00000627371 SPATA31C2B4DYI2 1134 aa23.16■■□□□ 1.3
PTCD3-220ENST00000627371 CYP3A4P08684 503 aa23.16■■□□□ 1.3
PTCD3-220ENST00000627371 ITGB5P18084 799 aa23.16■■□□□ 1.3
PTCD3-220ENST00000627371 IRX5P78411 483 aaPredicted RBP23.16■■□□□ 1.3
PTCD3-220ENST00000627371 SEMA3FQ13275 785 aa23.16■■□□□ 1.3
PTCD3-220ENST00000627371 CCSAPQ6IQ19 270 aaPredicted RBP23.16■■□□□ 1.3
PTCD3-220ENST00000627371 TSEN34Q9BSV6 310 aaKnown RBP23.16■■□□□ 1.3
PTCD3-220ENST00000627371 C11orf49Q9H6J7 331 aa23.16■■□□□ 1.3
PTCD3-220ENST00000627371 JADE2Q9NQC1 790 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms