RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 LRFN3Q9BTN0 628 aa9.18□□□□□ -0.94
CLK1-215ENST00000621181 MAP3K13O43283 966 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 GALR2O43603 387 aaPredicted RBP9.17□□□□□ -0.94
CLK1-215ENST00000621181 WDR5P61964 334 aaKnown RBP9.17□□□□□ -0.94
CLK1-215ENST00000621181 USH1GQ495M9 461 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 SPRED2Q7Z698 418 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 AFAP1L1Q8TED9 768 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 GDPD5Q8WTR4 605 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 MTUS1Q9ULD2 1270 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 WDR19Q8NEZ3 1342 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 LCHNA4D1U4 455 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 LPXNO60711 386 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 ARIH2O95376 493 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 SELPP16109 830 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 ZNF543Q08ER8 600 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 SEPT14Q6ZU15 432 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 LRRC8DQ7L1W4 858 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 CHST3Q7LGC8 479 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 TMCO2Q7Z6W1 182 aaPredicted RBP9.17□□□□□ -0.94
CLK1-215ENST00000621181 AFG1LQ8WV93 481 aa9.17□□□□□ -0.94
CLK1-215ENST00000621181 ARIH1Q9Y4X5 557 aaPredicted RBP9.17□□□□□ -0.94
CLK1-215ENST00000621181 PARNO95453 639 aaKnown RBP9.16□□□□□ -0.94
CLK1-215ENST00000621181 FGAP02671 866 aa9.16□□□□□ -0.94
CLK1-215ENST00000621181 MMP3P08254 477 aa9.16□□□□□ -0.94
CLK1-215ENST00000621181 FGRP09769 529 aa9.16□□□□□ -0.94
CLK1-215ENST00000621181 CASTP20810 708 aaKnown RBP9.16□□□□□ -0.94
CLK1-215ENST00000621181 HAND2P61296 217 aa9.16□□□□□ -0.94
CLK1-215ENST00000621181 DEFB103AP81534 67 aa9.16□□□□□ -0.94
CLK1-215ENST00000621181 GSE1Q14687 1217 aa9.16□□□□□ -0.94
CLK1-215ENST00000621181 LY6KQ17RY6 165 aa9.16□□□□□ -0.94
CLK1-215ENST00000621181 GDF6Q6KF10 455 aaPredicted RBP9.16□□□□□ -0.94
CLK1-215ENST00000621181 EVI5LQ96CN4 794 aa9.16□□□□□ -0.94
CLK1-215ENST00000621181 KIF12Q96FN5 646 aa9.16□□□□□ -0.94
CLK1-215ENST00000621181 TCP11L1Q9NUJ3 509 aa9.16□□□□□ -0.94
CLK1-215ENST00000621181 COL4A4P53420 1690 aaPredicted RBP9.16□□□□□ -0.94
CLK1-215ENST00000621181 MUC6Q6W4X9 2439 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 FAM86C2PA6NEL3 165 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 GJB5O95377 273 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 GH1P01241 217 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 CKBP12277 381 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 ALX1Q15699 326 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 DGKDQ16760 1214 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 GPATCH4Q5T3I0 446 aaKnown RBP9.15□□□□□ -0.94
CLK1-215ENST00000621181 CNKSR3Q6P9H4 555 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 SESTD1Q86VW0 696 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 C7orf31Q8N865 590 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 NSUN6Q8TEA1 469 aaKnown RBP9.15□□□□□ -0.94
CLK1-215ENST00000621181 MS4A3Q96HJ5 214 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 TTC14Q96N46 770 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 TGS1Q96RS0 853 aaKnown RBP9.15□□□□□ -0.94
CLK1-215ENST00000621181 RAD9AQ99638 391 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 HELLSQ9NRZ9 838 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 LMCD1Q9NZU5 365 aa9.15□□□□□ -0.94
CLK1-215ENST00000621181 WDFY4Q6ZS81 3184 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 ABHD14A-ACY1A0A1B0GW23 586 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 GPR37L1O60883 481 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 NBNO60934 754 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 EFCAB14O75071 495 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 GOLGA8HP0CJ92 632 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 HSPD1P10809 573 aaKnown RBP9.15□□□□□ -0.95
CLK1-215ENST00000621181 IKBKEQ14164 716 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 STXBP2Q15833 593 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 MCMDC2Q4G0Z9 681 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 FAM117BQ6P1L5 589 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 CCDC62Q6P9F0 684 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 MFSD6Q6ZSS7 791 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 KHSRPQ92945 711 aaKnown RBP eCLIP9.15□□□□□ -0.955e-8■■■□□ 15.6
CLK1-215ENST00000621181 FAM227BQ96M60 508 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 CTAGE1Q96RT6 745 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 ALG1Q9BT22 464 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 KATNAL1Q9BW62 490 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 SUGCTQ9HAC7 445 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 GTF2IRD1Q9UHL9 959 aa9.15□□□□□ -0.95
CLK1-215ENST00000621181 PTPRSQ13332 1948 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 PIEZO1Q92508 2521 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 CXCL10P02778 98 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 SNHG28P0DPA3 235 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 PCP11498 1178 aaKnown RBP9.14□□□□□ -0.95
CLK1-215ENST00000621181 KCNA5P22460 613 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 ARHGAP1Q07960 439 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 GPNMBQ14956 572 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 CDC37Q16543 378 aaPredicted RBP9.14□□□□□ -0.95
CLK1-215ENST00000621181 ARHGEF16Q5VV41 709 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 DHX37Q8IY37 1157 aaKnown RBP9.14□□□□□ -0.95
CLK1-215ENST00000621181 RGS22Q8NE09 1264 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 DHX38Q92620 1227 aaKnown RBP9.14□□□□□ -0.95
CLK1-215ENST00000621181 ESR2Q92731 530 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 KAT2BQ92831 832 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 RMDN3Q96TC7 470 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 UBA5Q9GZZ9 404 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 CPVLQ9H3G5 476 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 UBE2ZQ9H832 354 aaPredicted RBP9.14□□□□□ -0.95
CLK1-215ENST00000621181 HDAC6Q9UBN7 1215 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 PCDHB15Q9Y5E8 787 aa9.14□□□□□ -0.95
CLK1-215ENST00000621181 A0A0D9SFI3 127 aa9.13□□□□□ -0.95
CLK1-215ENST00000621181 LINC01553A4QN01 128 aa9.13□□□□□ -0.95
CLK1-215ENST00000621181 DHX16O60231 1041 aaKnown RBP9.13□□□□□ -0.95
CLK1-215ENST00000621181 ZNF286BP0CG31 522 aa9.13□□□□□ -0.95
CLK1-215ENST00000621181 SSTR3P32745 418 aaPredicted RBP9.13□□□□□ -0.95
CLK1-215ENST00000621181 ERVK-21P61565 698 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms