RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 PRDM6Q9NQX0 595 aa22.06■■□□□ 1.12
CDX1-202ENST00000616154 GHRHRQ02643 423 aa22.05■■□□□ 1.12
CDX1-202ENST00000616154 SEC23AQ15436 765 aa22.05■■□□□ 1.12
CDX1-202ENST00000616154 PPP2R2DQ66LE6 453 aa22.05■■□□□ 1.12
CDX1-202ENST00000616154 SESTD1Q86VW0 696 aa22.05■■□□□ 1.12
CDX1-202ENST00000616154 PPM1EQ8WY54 764 aa22.05■■□□□ 1.12
CDX1-202ENST00000616154 AMNQ9BXJ7 453 aa22.05■■□□□ 1.12
CDX1-202ENST00000616154 NOD1Q9Y239 953 aa22.05■■□□□ 1.12
CDX1-202ENST00000616154 U3KPZ7 1027 aaPredicted RBP22.05■■□□□ 1.12
CDX1-202ENST00000616154 EIF3JO75822 258 aaKnown RBP22.04■■□□□ 1.12
CDX1-202ENST00000616154 CYP21A2P08686 494 aa22.04■■□□□ 1.12
CDX1-202ENST00000616154 MYOGP15173 224 aa22.04■■□□□ 1.12
CDX1-202ENST00000616154 EIF2AK2P19525 551 aaKnown RBP22.04■■□□□ 1.12
CDX1-202ENST00000616154 HSD17B4P51659 736 aa22.04■■□□□ 1.12
CDX1-202ENST00000616154 BMP2KLQ5H9B9 411 aa22.04■■□□□ 1.12
CDX1-202ENST00000616154 ARHGEF16Q5VV41 709 aa22.04■■□□□ 1.12
CDX1-202ENST00000616154 STAG2Q8N3U4 1231 aa22.04■■□□□ 1.12
CDX1-202ENST00000616154 MAP4K1Q92918 833 aa22.04■■□□□ 1.12
CDX1-202ENST00000616154 EMID1Q96A84 441 aaPredicted RBP22.04■■□□□ 1.12
CDX1-202ENST00000616154 MTMR8Q96EF0 704 aa22.04■■□□□ 1.12
CDX1-202ENST00000616154 PXMP2Q9NR77 195 aa22.04■■□□□ 1.12
CDX1-202ENST00000616154 DDX41Q9UJV9 622 aaKnown RBP22.04■■□□□ 1.12
CDX1-202ENST00000616154 TRANK1O15050 2925 aa22.03■■□□□ 1.12
CDX1-202ENST00000616154 OPLAHO14841 1288 aa22.03■■□□□ 1.12
CDX1-202ENST00000616154 CASTP20810 708 aaKnown RBP22.03■■□□□ 1.12
CDX1-202ENST00000616154 IGFBP4P22692 258 aa22.03■■□□□ 1.12
CDX1-202ENST00000616154 PTGISQ16647 500 aa22.03■■□□□ 1.12
CDX1-202ENST00000616154 CCDC155Q8N6L0 562 aa22.03■■□□□ 1.12
CDX1-202ENST00000616154 ATXN2LQ8WWM7 1075 aaKnown RBP22.03■■□□□ 1.12
CDX1-202ENST00000616154 KAT2BQ92831 832 aa22.03■■□□□ 1.12
CDX1-202ENST00000616154 SLC9A7Q96T83 725 aa22.03■■□□□ 1.12
CDX1-202ENST00000616154 PTPRSQ13332 1948 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 MUC3AQ02505 3323 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 KLRF2D3W0D1 207 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 CFBP00751 764 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 NR3C2P08235 984 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 CHMP4BP1P59074 171 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 TMEM67Q5HYA8 995 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 CYB5R4Q7L1T6 521 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 CHST3Q7LGC8 479 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 CAGE1Q8TC20 777 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 PHOSPHO2Q8TCD6 241 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 CTAGE1Q96RT6 745 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 MAP3K20Q9NYL2 800 aaKnown RBP22.02■■□□□ 1.12
CDX1-202ENST00000616154 THEGQ9P2T0 379 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 MAD2L2Q9UI95 211 aa22.02■■□□□ 1.12
CDX1-202ENST00000616154 BAZ2BQ9UIF8 2168 aaKnown RBP22.02■■□□□ 1.11
CDX1-202ENST00000616154 NCOR1O75376 2440 aa22.01■■□□□ 1.11
CDX1-202ENST00000616154 PALM3A6NDB9 673 aaPredicted RBP22.01■■□□□ 1.11
CDX1-202ENST00000616154 ZBTB5O15062 677 aa22.01■■□□□ 1.11
CDX1-202ENST00000616154 PPP1R11O60927 126 aaPredicted RBP22.01■■□□□ 1.11
CDX1-202ENST00000616154 DGKDQ16760 1214 aa22.01■■□□□ 1.11
CDX1-202ENST00000616154 GDF6Q6KF10 455 aaPredicted RBP22.01■■□□□ 1.11
CDX1-202ENST00000616154 AFAP1L1Q8TED9 768 aa22.01■■□□□ 1.11
CDX1-202ENST00000616154 MRVI1Q9Y6F6 885 aa22.01■■□□□ 1.11
CDX1-202ENST00000616154 BAIAP3O94812 1187 aa22■■□□□ 1.11
CDX1-202ENST00000616154 CA3P07451 260 aa22■■□□□ 1.11
CDX1-202ENST00000616154 LAMC2Q13753 1193 aa22■■□□□ 1.11
CDX1-202ENST00000616154 CCDC85BQ15834 202 aaPredicted RBP22■■□□□ 1.11
CDX1-202ENST00000616154 SAMD3Q8N6K7 520 aa22■■□□□ 1.11
CDX1-202ENST00000616154 FTOQ9C0B1 505 aaKnown RBP eCLIP22■■□□□ 1.11
CDX1-202ENST00000616154 RBL2Q08999 1139 aa21.99■■□□□ 1.11
CDX1-202ENST00000616154 TRDNQ13061 729 aa21.99■■□□□ 1.11
CDX1-202ENST00000616154 GRM4Q14833 912 aa21.99■■□□□ 1.11
CDX1-202ENST00000616154 STOX1Q6ZVD7 989 aa21.99■■□□□ 1.11
CDX1-202ENST00000616154 PPTC7Q8NI37 304 aa21.99■■□□□ 1.11
CDX1-202ENST00000616154 PDCD2LQ9BRP1 358 aa21.99■■□□□ 1.11
CDX1-202ENST00000616154 ESYT1Q9BSJ8 1104 aa21.99■■□□□ 1.11
CDX1-202ENST00000616154 KATNAL1Q9BW62 490 aa21.99■■□□□ 1.11
CDX1-202ENST00000616154 GTF2IRD1Q9UHL9 959 aa21.99■■□□□ 1.11
CDX1-202ENST00000616154 PCDHA1Q9Y5I3 950 aa21.99■■□□□ 1.11
CDX1-202ENST00000616154 TAF6LQ9Y6J9 622 aa21.99■■□□□ 1.11
CDX1-202ENST00000616154 PRRC2BQ5JSZ5 2229 aaKnown RBP21.98■■□□□ 1.11
CDX1-202ENST00000616154 F2P00734 622 aa21.98■■□□□ 1.11
CDX1-202ENST00000616154 PSEN2P49810 448 aa21.98■■□□□ 1.11
CDX1-202ENST00000616154 HERC6Q8IVU3 1022 aa21.98■■□□□ 1.11
CDX1-202ENST00000616154 DHX38Q92620 1227 aaKnown RBP21.98■■□□□ 1.11
CDX1-202ENST00000616154 ASB2Q96Q27 587 aa21.98■■□□□ 1.11
CDX1-202ENST00000616154 LSG1Q9H089 658 aaKnown RBP21.98■■□□□ 1.11
CDX1-202ENST00000616154 REV3LO60673 3130 aa21.97■■□□□ 1.11
CDX1-202ENST00000616154 HAS3O00219 553 aa21.97■■□□□ 1.11
CDX1-202ENST00000616154 RGS20O76081 388 aa21.97■■□□□ 1.11
CDX1-202ENST00000616154 HOXD8P13378 290 aaPredicted RBP21.97■■□□□ 1.11
CDX1-202ENST00000616154 SELPP16109 830 aa21.97■■□□□ 1.11
CDX1-202ENST00000616154 TRAF1Q13077 416 aa21.97■■□□□ 1.11
CDX1-202ENST00000616154 SLC35G1Q2M3R5 365 aa21.97■■□□□ 1.11
CDX1-202ENST00000616154 KCNV1Q6PIU1 500 aa21.97■■□□□ 1.11
CDX1-202ENST00000616154 LRRC8DQ7L1W4 858 aa21.97■■□□□ 1.11
CDX1-202ENST00000616154 DHX37Q8IY37 1157 aaKnown RBP21.97■■□□□ 1.11
CDX1-202ENST00000616154 C7orf31Q8N865 590 aa21.97■■□□□ 1.11
CDX1-202ENST00000616154 RIOX1Q9H6W3 641 aa21.97■■□□□ 1.11
CDX1-202ENST00000616154 HDAC6Q9UBN7 1215 aa21.97■■□□□ 1.11
CDX1-202ENST00000616154 RBM8AQ9Y5S9 174 aaKnown RBP21.97■■□□□ 1.11
CDX1-202ENST00000616154 E7EWF7 191 aa21.96■■□□□ 1.11
CDX1-202ENST00000616154 PARNO95453 639 aaKnown RBP21.96■■□□□ 1.11
CDX1-202ENST00000616154 MYCLP12524 364 aaPredicted RBP21.96■■□□□ 1.11
CDX1-202ENST00000616154 POU3F3P20264 500 aaPredicted RBP21.96■■□□□ 1.11
CDX1-202ENST00000616154 MRPS5P82675 430 aaKnown RBP21.96■■□□□ 1.11
CDX1-202ENST00000616154 MFSD10Q14728 455 aa21.96■■□□□ 1.11
CDX1-202ENST00000616154 GPNMBQ14956 572 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms