RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 SH3GLB2Q9NR46 395 aa17.16■□□□□ 0.34
TRIM28-207ENST00000597136 DDX20Q9UHI6 824 aaKnown RBP17.16■□□□□ 0.34
TRIM28-207ENST00000597136 CIZ1Q9ULV3 898 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-207ENST00000597136 KCNJ14Q9UNX9 436 aa17.16■□□□□ 0.34
TRIM28-207ENST00000597136 KAT6AQ92794 2004 aa17.16■□□□□ 0.34
TRIM28-207ENST00000597136 TFRCP02786 760 aaKnown RBP17.15■□□□□ 0.34
TRIM28-207ENST00000597136 PDIA4P13667 645 aaKnown RBP17.15■□□□□ 0.34
TRIM28-207ENST00000597136 CLK2P49760 499 aaKnown RBP17.15■□□□□ 0.34
TRIM28-207ENST00000597136 GJC2Q5T442 439 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-207ENST00000597136 JAKMIP3Q5VZ66 844 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 KRT40Q6A162 431 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 VSIG10LQ86VR7 867 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 RASGRP4Q8TDF6 673 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 CRISPLD2Q9H0B8 497 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 NRBP1Q9UHY1 535 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 PCDHA6Q9UN73 950 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 PCDHA8Q9Y5H6 950 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 MYH9P35579 1960 aaKnown RBP17.15■□□□□ 0.34
TRIM28-207ENST00000597136 LOC102724159A0A0B4J2E5 919 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 H3BQV1 296 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 RGS20O76081 388 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 XBP1P17861 261 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 MRPS9P82933 396 aaKnown RBP17.15■□□□□ 0.34
TRIM28-207ENST00000597136 GUCY1B3Q02153 619 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 TRIM29Q14134 588 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 PWP2Q15269 919 aaKnown RBP17.15■□□□□ 0.34
TRIM28-207ENST00000597136 NPY5RQ15761 445 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 STXBP2Q15833 593 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 IFFO2Q5TF58 517 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 C6orf50Q9HD87 102 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 VTA1Q9NP79 307 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 FAM184BQ9ULE4 1060 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 FRMPD4Q14CM0 1322 aa17.15■□□□□ 0.34
TRIM28-207ENST00000597136 ESYT2A0FGR8 921 aa17.14■□□□□ 0.33
TRIM28-207ENST00000597136 VPS37CA5D8V6 355 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-207ENST00000597136 AKR1A1P14550 325 aa17.14■□□□□ 0.33
TRIM28-207ENST00000597136 NLRP5P59047 1200 aa17.14■□□□□ 0.33
TRIM28-207ENST00000597136 SEPT14Q6ZU15 432 aa17.14■□□□□ 0.33
TRIM28-207ENST00000597136 FAM177A1Q8N128 213 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-207ENST00000597136 PHF20Q9BVI0 1012 aa17.14■□□□□ 0.33
TRIM28-207ENST00000597136 RTEL1Q9NZ71 1219 aa17.14■□□□□ 0.33
TRIM28-207ENST00000597136 CHMP5Q9NZZ3 219 aa17.14■□□□□ 0.33
TRIM28-207ENST00000597136 MTMR6Q9Y217 621 aa17.14■□□□□ 0.33
TRIM28-207ENST00000597136 RBM47A0AV96 593 aaKnown RBP17.13■□□□□ 0.33
TRIM28-207ENST00000597136 SPDYE3A6NKU9 549 aa17.13■□□□□ 0.33
TRIM28-207ENST00000597136 B4DLN1 442 aa17.13■□□□□ 0.33
TRIM28-207ENST00000597136 ARIH2O95376 493 aa17.13■□□□□ 0.33
TRIM28-207ENST00000597136 PGK1P00558 417 aa17.13■□□□□ 0.33
TRIM28-207ENST00000597136 SMPD1P17405 629 aa17.13■□□□□ 0.33
TRIM28-207ENST00000597136 MNX1P50219 401 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-207ENST00000597136 NUCB2P80303 420 aa17.13■□□□□ 0.33
TRIM28-207ENST00000597136 TNFAIP2Q03169 654 aa17.13■□□□□ 0.33
TRIM28-207ENST00000597136 CCDC12Q8WUD4 166 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-207ENST00000597136 WDR11Q9BZH6 1224 aa17.13■□□□□ 0.33
TRIM28-207ENST00000597136 OGDHLQ9ULD0 1010 aa17.13■□□□□ 0.33
TRIM28-207ENST00000597136 ZDHHC9Q9Y397 364 aa17.13■□□□□ 0.33
TRIM28-207ENST00000597136 EIF3JO75822 258 aaKnown RBP17.12■□□□□ 0.33
TRIM28-207ENST00000597136 BRD1O95696 1058 aa17.12■□□□□ 0.33
TRIM28-207ENST00000597136 MMP1P03956 469 aa17.12■□□□□ 0.33
TRIM28-207ENST00000597136 IQSEC1Q6DN90 963 aa17.12■□□□□ 0.33
TRIM28-207ENST00000597136 CCDC148Q8NFR7 591 aa17.12■□□□□ 0.33
TRIM28-207ENST00000597136 COPS5Q92905 334 aa17.12■□□□□ 0.33
TRIM28-207ENST00000597136 MPHOSPH6Q99547 160 aaKnown RBP17.12■□□□□ 0.33
TRIM28-207ENST00000597136 ANO3Q9BYT9 981 aa17.12■□□□□ 0.33
TRIM28-207ENST00000597136 MYCNP04198 464 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-207ENST00000597136 ZSCAN22P10073 491 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-207ENST00000597136 RARBP10826 455 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 GNA11P29992 359 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 CCND2P30279 289 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 DIS3LQ8TF46 1054 aaKnown RBP17.11■□□□□ 0.33
TRIM28-207ENST00000597136 BCAS3Q9H6U6 928 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 XPNPEP3Q9NQH7 507 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 GNEQ9Y223 722 aaKnown RBP17.11■□□□□ 0.33
TRIM28-207ENST00000597136 MYADML2A6NDP7 307 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 M0R2N6 131 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 EDIL3O43854 480 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 MSCO60682 206 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 DUSP11O75319 330 aaKnown RBP17.11■□□□□ 0.33
TRIM28-207ENST00000597136 LY6KQ17RY6 165 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 FOXD4L5Q5VV16 416 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-207ENST00000597136 PCNX4Q63HM2 1172 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 CCDC62Q6P9F0 684 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 BLIDQ8IZY5 108 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 REXO1Q8N1G1 1221 aaKnown RBP17.11■□□□□ 0.33
TRIM28-207ENST00000597136 OXER1Q8TDS5 423 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 FOXD4L4Q8WXT5 416 aaPredicted RBP17.11■□□□□ 0.33
TRIM28-207ENST00000597136 GLT8D2Q9H1C3 349 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 PCDHA4Q9UN74 947 aa17.11■□□□□ 0.33
TRIM28-207ENST00000597136 SYNRGQ9UMZ2 1314 aa17.1■□□□□ 0.33
TRIM28-207ENST00000597136 CTAGE5O15320 804 aa17.1■□□□□ 0.33
TRIM28-207ENST00000597136 DYNC1LI2O43237 492 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-207ENST00000597136 FOSP01100 380 aaPredicted RBP17.1■□□□□ 0.33
TRIM28-207ENST00000597136 TXNP10599 105 aaKnown RBP17.1■□□□□ 0.33
TRIM28-207ENST00000597136 SP2Q02086 613 aa17.1■□□□□ 0.33
TRIM28-207ENST00000597136 SAFBQ15424 915 aaKnown RBP eCLIP17.1■□□□□ 0.33
TRIM28-207ENST00000597136 DUSP28Q4G0W2 176 aa17.1■□□□□ 0.33
TRIM28-207ENST00000597136 MCTP1Q6DN14 999 aa17.1■□□□□ 0.33
TRIM28-207ENST00000597136 GALNT17Q6IS24 598 aa17.1■□□□□ 0.33
TRIM28-207ENST00000597136 CYP2W1Q8TAV3 490 aa17.1■□□□□ 0.33
TRIM28-207ENST00000597136 SCFD2Q8WU76 684 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms