RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 KINO60870 393 aaKnown RBP34.58■■■■□ 3.13
CTCF-203ENST00000566078 SYKP43405 635 aa34.58■■■■□ 3.13
CTCF-203ENST00000566078 PGM5Q15124 567 aa34.58■■■■□ 3.13
CTCF-203ENST00000566078 ZSCAN23Q3MJ62 389 aa34.58■■■■□ 3.13
CTCF-203ENST00000566078 PAXIP1Q6ZW49 1069 aaPredicted RBP34.58■■■■□ 3.13
CTCF-203ENST00000566078 CYP2W1Q8TAV3 490 aa34.58■■■■□ 3.13
CTCF-203ENST00000566078 HAS1Q92839 578 aa34.58■■■■□ 3.13
CTCF-203ENST00000566078 EPSTI1Q96J88 318 aa34.58■■■■□ 3.13
CTCF-203ENST00000566078 NUP62CLQ9H1M0 184 aa34.58■■■■□ 3.13
CTCF-203ENST00000566078 KCNMB3Q9NPA1 279 aa34.58■■■■□ 3.13
CTCF-203ENST00000566078 KCNH3Q9ULD8 1083 aa34.58■■■■□ 3.13
CTCF-203ENST00000566078 IGLV3-22A0A075B6J6 115 aa34.57■■■■□ 3.12
CTCF-203ENST00000566078 TMEM266Q2M3C6 531 aa34.57■■■■□ 3.12
CTCF-203ENST00000566078 PCNX4Q63HM2 1172 aa34.57■■■■□ 3.12
CTCF-203ENST00000566078 R3HDMLQ9H3Y0 253 aa34.57■■■■□ 3.12
CTCF-203ENST00000566078 TECP42680 631 aa34.56■■■■□ 3.12
CTCF-203ENST00000566078 SHCBP1Q8NEM2 672 aa34.56■■■■□ 3.12
CTCF-203ENST00000566078 ZFP91Q96JP5 570 aaPredicted RBP34.56■■■■□ 3.12
CTCF-203ENST00000566078 PDCD2LQ9BRP1 358 aa34.56■■■■□ 3.12
CTCF-203ENST00000566078 CLSTN2Q9H4D0 955 aa34.56■■■■□ 3.12
CTCF-203ENST00000566078 ZCCHC17Q9NP64 241 aaKnown RBP34.56■■■■□ 3.12
CTCF-203ENST00000566078 MORF4L1Q9UBU8 362 aa34.56■■■■□ 3.12
CTCF-203ENST00000566078 CEP55Q53EZ4 464 aa34.55■■■■□ 3.12
CTCF-203ENST00000566078 ETNPPLQ8TBG4 499 aa34.55■■■■□ 3.12
CTCF-203ENST00000566078 GJA10Q969M2 543 aa34.55■■■■□ 3.12
CTCF-203ENST00000566078 MROH8Q9H579 483 aa34.55■■■■□ 3.12
CTCF-203ENST00000566078 ZNF202O95125 648 aa34.55■■■■□ 3.12
CTCF-203ENST00000566078 FXR2P51116 673 aaKnown RBP eCLIP34.55■■■■□ 3.127e-7■■■■■ 31.5
CTCF-203ENST00000566078 INHBEP58166 350 aa34.55■■■■□ 3.12
CTCF-203ENST00000566078 CCNA1P78396 465 aa34.55■■■■□ 3.12
CTCF-203ENST00000566078 GRM1Q13255 1194 aa34.55■■■■□ 3.12
CTCF-203ENST00000566078 WDR78Q5VTH9 848 aa34.55■■■■□ 3.12
CTCF-203ENST00000566078 DHX30Q7L2E3 1194 aaKnown RBP eCLIP34.55■■■■□ 3.12
CTCF-203ENST00000566078 UIMC1Q96RL1 719 aa34.55■■■■□ 3.12
CTCF-203ENST00000566078 TBX3O15119 743 aa34.54■■■■□ 3.12
CTCF-203ENST00000566078 SREBF2Q12772 1141 aa34.54■■■■□ 3.12
CTCF-203ENST00000566078 PLA2G4DQ86XP0 818 aa34.54■■■■□ 3.12
CTCF-203ENST00000566078 IFNL1Q8IU54 200 aa34.54■■■■□ 3.12
CTCF-203ENST00000566078 SLFN12Q8IYM2 578 aa34.54■■■■□ 3.12
CTCF-203ENST00000566078 NSUN6Q8TEA1 469 aaKnown RBP34.54■■■■□ 3.12
CTCF-203ENST00000566078 TTC12Q9H892 705 aaPredicted RBP34.54■■■■□ 3.12
CTCF-203ENST00000566078 MSH4O15457 936 aa34.53■■■■□ 3.12
CTCF-203ENST00000566078 MYCLP12524 364 aaPredicted RBP34.53■■■■□ 3.12
CTCF-203ENST00000566078 SETQ01105 290 aaPredicted RBP34.53■■■■□ 3.12
CTCF-203ENST00000566078 CAMK4Q16566 473 aa34.53■■■■□ 3.12
CTCF-203ENST00000566078 CYP4F22Q6NT55 531 aa34.53■■■■□ 3.12
CTCF-203ENST00000566078 AK8Q96MA6 479 aa34.53■■■■□ 3.12
CTCF-203ENST00000566078 MXRA8Q9BRK3 442 aa34.53■■■■□ 3.12
CTCF-203ENST00000566078 PORCNQ9H237 461 aa34.53■■■■□ 3.12
CTCF-203ENST00000566078 PP2D1A8MPX8 630 aa34.52■■■■□ 3.12
CTCF-203ENST00000566078 TAF1CQ15572 869 aaPredicted RBP34.52■■■■□ 3.12
CTCF-203ENST00000566078 IGSF22Q8N9C0 903 aa34.52■■■■□ 3.12
CTCF-203ENST00000566078 MMP19Q99542 508 aa34.52■■■■□ 3.12
CTCF-203ENST00000566078 RAB34Q9BZG1 259 aa34.52■■■■□ 3.12
CTCF-203ENST00000566078 CCND2P30279 289 aa34.52■■■■□ 3.12
CTCF-203ENST00000566078 TXLNAP40222 546 aa34.52■■■■□ 3.12
CTCF-203ENST00000566078 MRPS9P82933 396 aaKnown RBP34.52■■■■□ 3.12
CTCF-203ENST00000566078 PDILTQ8N807 584 aa34.52■■■■□ 3.12
CTCF-203ENST00000566078 TNMDQ9H2S6 317 aa34.52■■■■□ 3.12
CTCF-203ENST00000566078 EFCC1Q9HA90 598 aa34.52■■■■□ 3.12
CTCF-203ENST00000566078 MCM3APO60318 1980 aa34.51■■■■□ 3.11
CTCF-203ENST00000566078 POTEB2H3BUK9 544 aa34.51■■■■□ 3.11
CTCF-203ENST00000566078 MEIS1O00470 390 aa34.51■■■■□ 3.11
CTCF-203ENST00000566078 POLR2DO15514 142 aaKnown RBP34.51■■■■□ 3.11
CTCF-203ENST00000566078 CDC25AP30304 524 aa34.51■■■■□ 3.11
CTCF-203ENST00000566078 CNTN2Q02246 1040 aa34.51■■■■□ 3.11
CTCF-203ENST00000566078 KCTD2Q14681 263 aa34.51■■■■□ 3.11
CTCF-203ENST00000566078 FAM20AQ96MK3 541 aa34.51■■■■□ 3.11
CTCF-203ENST00000566078 PANK2Q9BZ23 570 aa34.51■■■■□ 3.11
CTCF-203ENST00000566078 PCDHA12Q9UN75 941 aa34.51■■■■□ 3.11
CTCF-203ENST00000566078 ADGRA2Q96PE1 1338 aa34.5■■■■□ 3.11
CTCF-203ENST00000566078 SYCE3A1L190 88 aa34.5■■■■□ 3.11
CTCF-203ENST00000566078 ITGB5P18084 799 aa34.5■■■■□ 3.11
CTCF-203ENST00000566078 FAM110CQ1W6H9 321 aa34.5■■■■□ 3.11
CTCF-203ENST00000566078 XRRA1Q6P2D8 792 aa34.5■■■■□ 3.11
CTCF-203ENST00000566078 DNERQ8NFT8 737 aa34.5■■■■□ 3.11
CTCF-203ENST00000566078 UBIAD1Q9Y5Z9 338 aa34.5■■■■□ 3.11
CTCF-203ENST00000566078 DOCK5Q9H7D0 1870 aa34.5■■■■□ 3.11
CTCF-203ENST00000566078 A0A087X0B3 334 aa34.49■■■■□ 3.11
CTCF-203ENST00000566078 POTEMA6NI47 508 aa34.49■■■■□ 3.11
CTCF-203ENST00000566078 NR3C2P08235 984 aa34.49■■■■□ 3.11
CTCF-203ENST00000566078 NIPA1Q7RTP0 329 aa34.49■■■■□ 3.11
CTCF-203ENST00000566078 CREBZFQ9NS37 354 aa34.49■■■■□ 3.11
CTCF-203ENST00000566078 LRWD1Q9UFC0 647 aa34.49■■■■□ 3.11
CTCF-203ENST00000566078 UBA7P41226 1012 aa34.48■■■■□ 3.11
CTCF-203ENST00000566078 TIGD1Q96MW7 591 aa34.48■■■■□ 3.11
CTCF-203ENST00000566078 ZIC5Q96T25 663 aa34.48■■■■□ 3.11
CTCF-203ENST00000566078 FCER1AP12319 257 aa34.48■■■■□ 3.11
CTCF-203ENST00000566078 APLP1P51693 650 aa34.48■■■■□ 3.11
CTCF-203ENST00000566078 PDIA5Q14554 519 aa34.48■■■■□ 3.11
CTCF-203ENST00000566078 VSIG10LQ86VR7 867 aa34.48■■■■□ 3.11
CTCF-203ENST00000566078 CPA4Q9UI42 421 aa34.48■■■■□ 3.11
CTCF-203ENST00000566078 ASTN1O14525 1302 aa34.47■■■■□ 3.11
CTCF-203ENST00000566078 LETM1O95202 739 aaPredicted RBP34.47■■■■□ 3.11
CTCF-203ENST00000566078 ARP10275 920 aa34.47■■■■□ 3.11
CTCF-203ENST00000566078 ALDH5A1P51649 535 aaPredicted RBP34.47■■■■□ 3.11
CTCF-203ENST00000566078 LONRF3Q496Y0 759 aa34.47■■■■□ 3.11
CTCF-203ENST00000566078 FAM133AQ8N9E0 248 aa34.47■■■■□ 3.11
CTCF-203ENST00000566078 DHX58Q96C10 678 aa34.47■■■■□ 3.11
CTCF-203ENST00000566078 WDR11Q9BZH6 1224 aa34.47■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms