RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 NRBP1Q9UHY1 535 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 KDM3AQ9Y4C1 1321 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 TBX3O15119 743 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 WDR46O15213 610 aaKnown RBP18.9■□□□□ 0.62
LDLR-206ENST00000557958 PPP1R2P41236 205 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 TPD52L1Q16890 204 aaPredicted RBP18.9■□□□□ 0.62
LDLR-206ENST00000557958 KLHL10Q6JEL2 608 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 FILIP1Q7Z7B0 1213 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 CCDC150Q8NCX0 1101 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 SNX29Q8TEQ0 813 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 MBOAT7Q96N66 472 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 RPAP3Q9H6T3 665 aaPredicted RBP18.9■□□□□ 0.62
LDLR-206ENST00000557958 STK24Q9Y6E0 443 aa18.9■□□□□ 0.62
LDLR-206ENST00000557958 ABCB11O95342 1321 aa18.89■□□□□ 0.61
LDLR-206ENST00000557958 EDIL3O43854 480 aa18.89■□□□□ 0.61
LDLR-206ENST00000557958 ZNF18P17022 549 aa18.89■□□□□ 0.61
LDLR-206ENST00000557958 VCAM1P19320 739 aa18.89■□□□□ 0.61
LDLR-206ENST00000557958 SV2BQ7L1I2 683 aa18.89■□□□□ 0.61
LDLR-206ENST00000557958 TRMT44Q8IYL2 757 aaKnown RBP18.89■□□□□ 0.61
LDLR-206ENST00000557958 UBE2Q2Q8WVN8 375 aa18.89■□□□□ 0.61
LDLR-206ENST00000557958 PLIN2Q99541 437 aa18.89■□□□□ 0.61
LDLR-206ENST00000557958 MMTAG2Q9BU76 263 aaKnown RBP18.89■□□□□ 0.61
LDLR-206ENST00000557958 NT5C3AQ9H0P0 336 aa18.89■□□□□ 0.61
LDLR-206ENST00000557958 TMOD4Q9NZQ9 345 aa18.89■□□□□ 0.61
LDLR-206ENST00000557958 RWDD2AQ9UIY3 292 aa18.89■□□□□ 0.61
LDLR-206ENST00000557958 AFG3L2Q9Y4W6 797 aa18.89■□□□□ 0.61
LDLR-206ENST00000557958 DOCK1Q14185 1865 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 PPP1R3GB7ZBB8 358 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 FLOT1O75955 427 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 RHOBTB3O94955 611 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 TAL1P17542 331 aaPredicted RBP18.88■□□□□ 0.61
LDLR-206ENST00000557958 HOXA7P31268 230 aaPredicted RBP18.88■□□□□ 0.61
LDLR-206ENST00000557958 PAK1Q13153 545 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 HAS1Q92839 578 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 CTAGE1Q96RT6 745 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 C7orf25Q9BPX7 421 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 KCNMB3Q9NPA1 279 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 PNMA2Q9UL42 364 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 C19orf81C9J6K1 198 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 GCOM1H8Y6P7 765 aaPredicted RBP18.88■□□□□ 0.61
LDLR-206ENST00000557958 RRP9O43818 475 aaKnown RBP18.88■□□□□ 0.61
LDLR-206ENST00000557958 POLR2MP0CAP2 368 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 CCDC144BQ3MJ40 725 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 Q4G0T1 1027 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 TMC6Q7Z403 805 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 LRRC8AQ8IWT6 810 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 CRYGNQ8WXF5 182 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 TRIM9Q9C026 710 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 EXOC1Q9NV70 894 aa18.88■□□□□ 0.61
LDLR-206ENST00000557958 POTEMA6NI47 508 aa18.87■□□□□ 0.61
LDLR-206ENST00000557958 CD44P16070 742 aaKnown RBP18.87■□□□□ 0.61
LDLR-206ENST00000557958 ANKRD20A12PQ8NF67 263 aa18.87■□□□□ 0.61
LDLR-206ENST00000557958 KIAA1524Q8TCG1 905 aa18.87■□□□□ 0.61
LDLR-206ENST00000557958 LARP4BQ92615 738 aaKnown RBP18.87■□□□□ 0.61
LDLR-206ENST00000557958 CTNND2Q9UQB3 1225 aa18.87■□□□□ 0.61
LDLR-206ENST00000557958 CTDP1Q9Y5B0 961 aaPredicted RBP18.87■□□□□ 0.61
LDLR-206ENST00000557958 CELF2O95319 508 aaKnown RBP18.86■□□□□ 0.61
LDLR-206ENST00000557958 CYP3A4P08684 503 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 CIITAP33076 1130 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 ASIC1P78348 528 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 SPAG1Q07617 926 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 GRB10Q13322 594 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 NOLC1Q14978 699 aaKnown RBP eCLIP18.86■□□□□ 0.61
LDLR-206ENST00000557958 KMT5BQ4FZB7 885 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 HAUS3Q68CZ6 603 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 SMYD4Q8IYR2 804 aaPredicted RBP18.86■□□□□ 0.61
LDLR-206ENST00000557958 PRPF38AQ8NAV1 312 aaKnown RBP18.86■□□□□ 0.61
LDLR-206ENST00000557958 ERMNQ8TAM6 284 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 FAM20AQ96MK3 541 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 SLF1Q9BQI6 1058 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 MYH7BA7E2Y1 1941 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 PSMA7O14818 248 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 IRF6O14896 467 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 ZNF76P36508 570 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 CNNM4Q6P4Q7 775 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 GADL1Q6ZQY3 521 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 ERO1BQ86YB8 467 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 CACTINQ8WUQ7 758 aaKnown RBP18.86■□□□□ 0.61
LDLR-206ENST00000557958 SLC10A4Q96EP9 437 aa18.86■□□□□ 0.61
LDLR-206ENST00000557958 OPLAHO14841 1288 aa18.85■□□□□ 0.61
LDLR-206ENST00000557958 CFBP00751 764 aa18.85■□□□□ 0.61
LDLR-206ENST00000557958 SFPQP23246 707 aaKnown RBP eCLIP18.85■□□□□ 0.61
LDLR-206ENST00000557958 FILIP1LQ4L180 1135 aa18.85■□□□□ 0.61
LDLR-206ENST00000557958 TMEM119Q4V9L6 283 aa18.85■□□□□ 0.61
LDLR-206ENST00000557958 PRR16Q569H4 304 aa18.85■□□□□ 0.61
LDLR-206ENST00000557958 CPXCR1Q8N123 301 aa18.85■□□□□ 0.61
LDLR-206ENST00000557958 NELFBQ8WX92 580 aa18.85■□□□□ 0.61
LDLR-206ENST00000557958 RAD54LQ92698 747 aa18.85■□□□□ 0.61
LDLR-206ENST00000557958 OPTNQ96CV9 577 aa18.85■□□□□ 0.61
LDLR-206ENST00000557958 SPTLC3Q9NUV7 552 aa18.85■□□□□ 0.61
LDLR-206ENST00000557958 RABGAP1Q9Y3P9 1069 aa18.85■□□□□ 0.61
LDLR-206ENST00000557958 KLRC4O43908 158 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 ICAM1P05362 532 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 HOXA13P31271 388 aaPredicted RBP18.84■□□□□ 0.61
LDLR-206ENST00000557958 CCT6AP40227 531 aaKnown RBP18.84■□□□□ 0.61
LDLR-206ENST00000557958 STX17P56962 302 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 PPATQ06203 517 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 HYIQ5T013 277 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 VSTM4Q8IW00 320 aa18.84■□□□□ 0.61
LDLR-206ENST00000557958 GIMAP8Q8ND71 665 aaPredicted RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms