RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-218	ENST00000546298	TRMT13	Q9NUP7	481 aa	Known RBP	10.84	□□□□□ -0.67
YBX3-218	ENST00000546298	DDX41	Q9UJV9	622 aa	Known RBP	10.84	□□□□□ -0.67
YBX3-218	ENST00000546298	MRVI1	Q9Y6F6	885 aa		10.84	□□□□□ -0.67
YBX3-218	ENST00000546298	TAF6L	Q9Y6J9	622 aa		10.84	□□□□□ -0.67
YBX3-218	ENST00000546298	PLXNA1	Q9UIW2	1896 aa		10.84	□□□□□ -0.67
YBX3-218	ENST00000546298	OPLAH	O14841	1288 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	SLC27A2	O14975	620 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	CYTH3	O43739	400 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	MMP3	P08254	477 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	TGFB3	P10600	412 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	DNAJB2	P25686	324 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	HOXA13	P31271	388 aa	Predicted RBP	10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	ARHGAP1	Q07960	439 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	BFSP2	Q13515	415 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	RAB30	Q15771	203 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	LY6K	Q17RY6	165 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	RASIP1	Q5U651	963 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	VSIG10L	Q86VR7	867 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	FCHSD1	Q86WN1	690 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	DHX37	Q8IY37	1157 aa	Known RBP	10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	ZNF654	Q8IZM8	581 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	CCDC155	Q8N6L0	562 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	CUL5	Q93034	780 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	EMID1	Q96A84	441 aa	Predicted RBP	10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	KATNAL1	Q9BW62	490 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	SPZ1	Q9BXG8	430 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	LY9	Q9HBG7	655 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	SENP2	Q9HC62	589 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	SEC63	Q9UGP8	760 aa	Known RBP	10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	MSRA	Q9UJ68	235 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	UMODL1	Q5DID0	1318 aa		10.83	□□□□□ -0.68
YBX3-218	ENST00000546298	PPFIA4	O75335	1185 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	STAM2	O75886	525 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	CYP2C9	P11712	490 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	ACTN1	P12814	892 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	CCND2	P30279	289 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	RFC2	P35250	354 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	LIFR	P42702	1097 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	CHMP4BP1	P59074	171 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	PGM5	Q15124	567 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	NECTIN1	Q15223	517 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	SLC35G1	Q2M3R5	365 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	CREB3L3	Q68CJ9	461 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	SYNE3	Q6ZMZ3	975 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	SESTD1	Q86VW0	696 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	PPTC7	Q8NI37	304 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	TIFA	Q96CG3	184 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	WNT8A	Q9H1J5	351 aa		10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	TTYH1	Q9H313	450 aa	Predicted RBP	10.82	□□□□□ -0.68
YBX3-218	ENST00000546298	PITPNM1	O00562	1244 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	SH2B2	O14492	632 aa	Predicted RBP	10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	PTGIS	Q16647	500 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	GNPTAB	Q3T906	1256 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	XRRA1	Q6P2D8	792 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	OTOP2	Q7RTS6	562 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	C7orf31	Q8N865	590 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	SMARCC2	Q8TAQ2	1214 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	CAGE1	Q8TC20	777 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	PIBF1	Q8WXW3	757 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	SCLY	Q96I15	445 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	SPATA33	Q96N06	139 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	ZNF576	Q9H609	170 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	MLXIP	Q9HAP2	919 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	RNF216	Q9NWF9	866 aa	Predicted RBP	10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	SLC12A7	Q9Y666	1083 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	SLC4A7	Q9Y6M7	1214 aa		10.81	□□□□□ -0.68
YBX3-218	ENST00000546298	ZBBX	A8MT70	800 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	CDC45	O75419	566 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	RGS20	O76081	388 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	PARN	O95453	639 aa	Known RBP	10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	GGPS1	O95749	300 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	FOSL2	P15408	326 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	PSEN2	P49810	448 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	CELF3	Q5SZQ8	465 aa	Known RBP	10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	MYSM1	Q5VVJ2	828 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	FANCB	Q8NB91	859 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	MAFA	Q8NHW3	353 aa	Predicted RBP	10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	MYLIP	Q8WY64	445 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	KAT2B	Q92831	832 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	NEK1	Q96PY6	1258 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	MYL10	Q9BUA6	226 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	PBX4	Q9BYU1	374 aa		10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	CXXC1	Q9P0U4	656 aa	Predicted RBP	10.8	□□□□□ -0.68
YBX3-218	ENST00000546298	GRXCR1	A8MXD5	290 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	PIK3CD	O00329	1044 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	IQCF3	P0C7M6	154 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	HOXD8	P13378	290 aa	Predicted RBP	10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	ICAM3	P32942	547 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	NEDD9	Q14511	834 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	KRT32	Q14532	448 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	MFSD10	Q14728	455 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	GRIN2C	Q14957	1233 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	DEFB128	Q7Z7B8	93 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	NLRX1	Q86UT6	975 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	SGMS1	Q86VZ5	419 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	SRBD1	Q8N5C6	995 aa	Known RBP	10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	IL31RA	Q8NI17	732 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	AFAP1L1	Q8TED9	768 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	ALG1	Q9BT22	464 aa		10.79	□□□□□ -0.68
YBX3-218	ENST00000546298	FTO	Q9C0B1	505 aa	Known RBP eCLIP	10.79	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms