RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 ARHGAP4P98171 946 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 STXBP2Q15833 593 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 INF2Q27J81 1249 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 EARS2Q5JPH6 523 aaKnown RBP13.22□□□□□ -0.29
YBX3-213ENST00000542641 MFSD14CQ5VZR4 134 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 PCNX4Q63HM2 1172 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 XRRA1Q6P2D8 792 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 ARMCX2Q7L311 632 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 FERMT3Q86UX7 667 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 VSIG10LQ86VR7 867 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 IL31RAQ8NI17 732 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 PRDM10Q9NQV6 1147 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 PTCH2Q9Y6C5 1203 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 DDX49Q9Y6V7 483 aaKnown RBP13.22□□□□□ -0.29
YBX3-213ENST00000542641 ZNF236Q9UL36 1845 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 SYNGAP1Q96PV0 1343 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 FAM205CA6NFA0 338 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 EIF3JO75822 258 aaKnown RBP13.21□□□□□ -0.29
YBX3-213ENST00000542641 ELNP15502 786 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 CYP2C19P33261 490 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 ZNF76P36508 570 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 USP11P51784 963 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 PKP1Q13835 747 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 FOXD4L5Q5VV16 416 aaPredicted RBP13.21□□□□□ -0.29
YBX3-213ENST00000542641 EEPD1Q7L9B9 569 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 SLAIN1Q8ND83 568 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 MORC4Q8TE76 937 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 PXYLP1Q8TE99 480 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 FOXD4L4Q8WXT5 416 aaPredicted RBP13.21□□□□□ -0.29
YBX3-213ENST00000542641 TRIB2Q92519 343 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 ZFP91Q96JP5 570 aaPredicted RBP13.21□□□□□ -0.29
YBX3-213ENST00000542641 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.21□□□□□ -0.29
YBX3-213ENST00000542641 RTEL1Q9NZ71 1219 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 CNPY2Q9Y2B0 182 aa13.21□□□□□ -0.29
YBX3-213ENST00000542641 RBBP6Q7Z6E9 1792 aaKnown RBP13.21□□□□□ -0.29
YBX3-213ENST00000542641 DOCK3Q8IZD9 2030 aa13.2□□□□□ -0.3
YBX3-213ENST00000542641 CASP8AP2Q9UKL3 1982 aa13.2□□□□□ -0.3
YBX3-213ENST00000542641 ZNFX1Q9P2E3 1918 aaKnown RBP13.2□□□□□ -0.3
YBX3-213ENST00000542641 STAM2O75886 525 aa13.2□□□□□ -0.3
YBX3-213ENST00000542641 SNAI1O95863 264 aaPredicted RBP13.2□□□□□ -0.3
YBX3-213ENST00000542641 CYP3A4P08684 503 aa13.2□□□□□ -0.3
YBX3-213ENST00000542641 ZSCAN22P10073 491 aaPredicted RBP13.2□□□□□ -0.3
YBX3-213ENST00000542641 GRK4P32298 578 aa13.2□□□□□ -0.3
YBX3-213ENST00000542641 MRPS9P82933 396 aaKnown RBP13.2□□□□□ -0.3
YBX3-213ENST00000542641 PKN2Q16513 984 aaKnown RBP13.2□□□□□ -0.3
YBX3-213ENST00000542641 LETM2Q2VYF4 491 aa13.2□□□□□ -0.3
YBX3-213ENST00000542641 BRAPQ7Z569 592 aa13.2□□□□□ -0.3
YBX3-213ENST00000542641 NEK8Q86SG6 692 aa13.2□□□□□ -0.3
YBX3-213ENST00000542641 CRYGNQ8WXF5 182 aa13.2□□□□□ -0.3
YBX3-213ENST00000542641 ZSCAN16Q9H4T2 348 aaPredicted RBP13.2□□□□□ -0.3
YBX3-213ENST00000542641 NOL7Q9UMY1 257 aaKnown RBP13.2□□□□□ -0.3
YBX3-213ENST00000542641 IGHA2P01877 340 aa13.19□□□□□ -0.3
YBX3-213ENST00000542641 HMGCRP04035 888 aa13.19□□□□□ -0.3
YBX3-213ENST00000542641 ATP2B1P20020 1258 aa13.19□□□□□ -0.3
YBX3-213ENST00000542641 DDIT3P35638 169 aa13.19□□□□□ -0.3
YBX3-213ENST00000542641 RESTQ13127 1097 aa13.19□□□□□ -0.3
YBX3-213ENST00000542641 ACVR2BQ13705 512 aa13.19□□□□□ -0.3
YBX3-213ENST00000542641 CEP55Q53EZ4 464 aa13.19□□□□□ -0.3
YBX3-213ENST00000542641 PRAMEF19Q5SWL8 479 aa13.19□□□□□ -0.3
YBX3-213ENST00000542641 SEPT14Q6ZU15 432 aa13.19□□□□□ -0.3
YBX3-213ENST00000542641 FBXO16Q8IX29 292 aaPredicted RBP13.19□□□□□ -0.3
YBX3-213ENST00000542641 ABHD16BQ9H3Z7 469 aa13.19□□□□□ -0.3
YBX3-213ENST00000542641 VTA1Q9NP79 307 aa13.19□□□□□ -0.3
YBX3-213ENST00000542641 EDIL3O43854 480 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 CCNT1O60563 726 aaKnown RBP13.18□□□□□ -0.3
YBX3-213ENST00000542641 BRD1O95696 1058 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 F13A1P00488 732 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 ITGB5P18084 799 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 CIITAP33076 1130 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 TRAPPC10P48553 1259 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 NUCB2P80303 420 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 TRIM32Q13049 653 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 GNPTABQ3T906 1256 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 SLC9C1Q4G0N8 1177 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 RILPL1Q5EBL4 403 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 FBXO46Q6PJ61 603 aaPredicted RBP13.18□□□□□ -0.3
YBX3-213ENST00000542641 NLRX1Q86UT6 975 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 CYP2W1Q8TAV3 490 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 SH3TC2Q8TF17 1288 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 INPP4AQ96PE3 977 aaPredicted RBP13.18□□□□□ -0.3
YBX3-213ENST00000542641 NAP1L4Q99733 375 aaKnown RBP13.18□□□□□ -0.3
YBX3-213ENST00000542641 MXRA8Q9BRK3 442 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 ZHX1Q9UKY1 873 aaPredicted RBP13.18□□□□□ -0.3
YBX3-213ENST00000542641 ZDHHC9Q9Y397 364 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 UBIAD1Q9Y5Z9 338 aa13.18□□□□□ -0.3
YBX3-213ENST00000542641 LCTP09848 1927 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 CYP3A7-CYP3A51PA0A087WV96 503 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 FAM86B1E9PN63 330 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 MEIS1O00470 390 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 RGS20O76081 388 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 TDP2O95551 362 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 INHAP05111 366 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 FAM86B2P0C5J1 330 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 GCFC2P16383 781 aaKnown RBP13.17□□□□□ -0.3
YBX3-213ENST00000542641 CYP3A7P24462 503 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 TOB1P50616 345 aaPredicted RBP13.17□□□□□ -0.3
YBX3-213ENST00000542641 CACNB2Q08289 660 aaPredicted RBP13.17□□□□□ -0.3
YBX3-213ENST00000542641 MTMR1Q13613 665 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 PRR16Q569H4 304 aa13.17□□□□□ -0.3
YBX3-213ENST00000542641 MYSM1Q5VVJ2 828 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms