RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 SENP2Q9HC62 589 aa15.1■□□□□ 0.01
CPSF1-204ENST00000529288 YBX2Q9Y2T7 364 aaKnown RBP15.1■□□□□ 0.01
CPSF1-204ENST00000529288 TAF6LQ9Y6J9 622 aa15.1■□□□□ 0.01
CPSF1-204ENST00000529288 PALM3A6NDB9 673 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-204ENST00000529288 E7EWF7 191 aa15.09■□□□□ 0.01
CPSF1-204ENST00000529288 ACTN1P12814 892 aa15.09■□□□□ 0.01
CPSF1-204ENST00000529288 ATP2A2P16615 1042 aaKnown RBP15.09■□□□□ 0.01
CPSF1-204ENST00000529288 PTPN11Q06124 597 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-204ENST00000529288 BFSP2Q13515 415 aa15.09■□□□□ 0.01
CPSF1-204ENST00000529288 GRM4Q14833 912 aa15.09■□□□□ 0.01
CPSF1-204ENST00000529288 TMEM67Q5HYA8 995 aa15.09■□□□□ 0.01
CPSF1-204ENST00000529288 USP38Q8NB14 1042 aa15.09■□□□□ 0.01
CPSF1-204ENST00000529288 MAF1Q9H063 256 aa15.09■□□□□ 0.01
CPSF1-204ENST00000529288 DDX41Q9UJV9 622 aaKnown RBP15.09■□□□□ 0.01
CPSF1-204ENST00000529288 GCOM1H8Y6P7 765 aaPredicted RBP15.08■□□□□ 0
CPSF1-204ENST00000529288 OPLAHO14841 1288 aa15.08■□□□□ 0
CPSF1-204ENST00000529288 PFKMP08237 780 aa15.08■□□□□ 0
CPSF1-204ENST00000529288 IQCF3P0C7M6 154 aa15.08■□□□□ 0
CPSF1-204ENST00000529288 POLR2MP0CAP2 368 aa15.08■□□□□ 0
CPSF1-204ENST00000529288 HSD17B4P51659 736 aa15.08■□□□□ 0
CPSF1-204ENST00000529288 DGKDQ16760 1214 aa15.08■□□□□ 0
CPSF1-204ENST00000529288 PPP2R2DQ66LE6 453 aa15.08■□□□□ 0
CPSF1-204ENST00000529288 GDF6Q6KF10 455 aaPredicted RBP15.08■□□□□ 0
CPSF1-204ENST00000529288 CATIPQ7Z7H3 387 aa15.08■□□□□ 0
CPSF1-204ENST00000529288 C7orf31Q8N865 590 aa15.08■□□□□ 0
CPSF1-204ENST00000529288 SGSM2O43147 1006 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 ZNF286BP0CG31 522 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 PSEN2P49810 448 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 TRAF1Q13077 416 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 LAMC2Q13753 1193 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 SLC35G1Q2M3R5 365 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 STOX1Q6ZVD7 989 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 MICALL1Q8N3F8 863 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 CCDC155Q8N6L0 562 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 KAT2BQ92831 832 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 VWCEQ96DN2 955 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 MTMR8Q96EF0 704 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 PDCD2LQ9BRP1 358 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 PRDM6Q9NQX0 595 aa15.07■□□□□ 0
CPSF1-204ENST00000529288 CCND2P30279 289 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 RFC2P35250 354 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 ADGRE1Q14246 886 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 PGM5Q15124 567 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 NFXL1Q6ZNB6 911 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 IL31RAQ8NI17 732 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 SPATA33Q96N06 139 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 MYL10Q9BUA6 226 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 CERS4Q9HA82 394 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 HDAC6Q9UBN7 1215 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 PCDHA11Q9Y5I1 949 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 RBM8AQ9Y5S9 174 aaKnown RBP15.06■□□□□ 0
CPSF1-204ENST00000529288 LAMA4Q16363 1823 aa15.06■□□□□ 0
CPSF1-204ENST00000529288 PNMA6FA0A0J9YX94 578 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 PITPNM1O00562 1244 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 CYTH3O43739 400 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 GGPS1O95749 300 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 MFSD10Q14728 455 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 KIAA0753Q2KHM9 967 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 CASC1Q6TDU7 716 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 VSIG10LQ86VR7 867 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 KATNAL1Q9BW62 490 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 RIOX1Q9H6W3 641 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 MLXIPQ9HAP2 919 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 MAP3K20Q9NYL2 800 aaKnown RBP15.05■□□□□ -0
CPSF1-204ENST00000529288 UNC80Q8N2C7 3258 aa15.05■□□□□ -0
CPSF1-204ENST00000529288 CA3P07451 260 aa15.04■□□□□ -0
CPSF1-204ENST00000529288 KCNJ6P48051 423 aa15.04■□□□□ -0
CPSF1-204ENST00000529288 ANTXR2P58335 489 aa15.04■□□□□ -0
CPSF1-204ENST00000529288 ZNF200P98182 395 aaPredicted RBP15.04■□□□□ -0
CPSF1-204ENST00000529288 TROAPQ12815 778 aa15.04■□□□□ -0
CPSF1-204ENST00000529288 CELF3Q5SZQ8 465 aaKnown RBP15.04■□□□□ -0
CPSF1-204ENST00000529288 KCNV1Q6PIU1 500 aa15.04■□□□□ -0
CPSF1-204ENST00000529288 PPTC7Q8NI37 304 aa15.04■□□□□ -0
CPSF1-204ENST00000529288 CTCFLQ8NI51 663 aaPredicted RBP15.04■□□□□ -0
CPSF1-204ENST00000529288 CAGE1Q8TC20 777 aa15.04■□□□□ -0
CPSF1-204ENST00000529288 GPKOWQ92917 476 aaPredicted RBP eCLIP15.04■□□□□ -0
CPSF1-204ENST00000529288 MAP4K1Q92918 833 aa15.04■□□□□ -0
CPSF1-204ENST00000529288 RTEL1Q9NZ71 1219 aa15.04■□□□□ -0
CPSF1-204ENST00000529288 GTF2IRD1Q9UHL9 959 aa15.04■□□□□ -0
CPSF1-204ENST00000529288 EYSQ5T1H1 3165 aa15.04■□□□□ -0
CPSF1-204ENST00000529288 KIF28PB7ZC32 967 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 RBAK-RBAKDNI3L0D1 243 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 RFXAPO00287 272 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 PRC1O43663 620 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 RGS20O76081 388 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 SELPP16109 830 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 SP2Q02086 613 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 HSDL1Q3SXM5 330 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 MYSM1Q5VVJ2 828 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 LRRC8DQ7L1W4 858 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 RAB11FIP4Q86YS3 637 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 MB21D2Q8IYB1 491 aaPredicted RBP15.03■□□□□ -0
CPSF1-204ENST00000529288 ZNF654Q8IZM8 581 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 SAMD3Q8N6K7 520 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 IGDCC4Q8TDY8 1250 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 AFAP1L1Q8TED9 768 aa15.03■□□□□ -0
CPSF1-204ENST00000529288 DHX38Q92620 1227 aaKnown RBP15.03■□□□□ -0
CPSF1-204ENST00000529288 SYMPKQ92797 1274 aaKnown RBP15.03■□□□□ -0
CPSF1-204ENST00000529288 EMID1Q96A84 441 aaPredicted RBP15.03■□□□□ -0
CPSF1-204ENST00000529288 RRP36Q96EU6 259 aaKnown RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 118.5 ms