RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 TRIM71Q2Q1W2 868 aaKnown RBP16.52■□□□□ 0.24
NKX3-1-202ENST00000523261 ZNF618Q5T7W0 954 aa16.52■□□□□ 0.24
NKX3-1-202ENST00000523261 TMEM57Q8N5G2 664 aa16.52■□□□□ 0.24
NKX3-1-202ENST00000523261 DBF4BQ8NFT6 615 aa16.52■□□□□ 0.24
NKX3-1-202ENST00000523261 KAT2BQ92831 832 aa16.52■□□□□ 0.24
NKX3-1-202ENST00000523261 YME1L1Q96TA2 773 aa16.52■□□□□ 0.24
NKX3-1-202ENST00000523261 GTF2IRD1Q9UHL9 959 aa16.52■□□□□ 0.24
NKX3-1-202ENST00000523261 CCPG1Q9ULG6 757 aa16.52■□□□□ 0.24
NKX3-1-202ENST00000523261 EXOC6BQ9Y2D4 811 aa16.52■□□□□ 0.24
NKX3-1-202ENST00000523261 VPS13AQ96RL7 3174 aa16.52■□□□□ 0.23
NKX3-1-202ENST00000523261 PLA2G6O60733 806 aa16.51■□□□□ 0.23
NKX3-1-202ENST00000523261 GTF2F1P35269 517 aaKnown RBP eCLIP16.51■□□□□ 0.23
NKX3-1-202ENST00000523261 UBE3CQ15386 1083 aa16.51■□□□□ 0.23
NKX3-1-202ENST00000523261 ERC1Q8IUD2 1116 aa16.51■□□□□ 0.23
NKX3-1-202ENST00000523261 WNT8BQ93098 351 aa16.51■□□□□ 0.23
NKX3-1-202ENST00000523261 GMCL1Q96IK5 515 aa16.51■□□□□ 0.23
NKX3-1-202ENST00000523261 MSLNLQ96KJ4 702 aa16.51■□□□□ 0.23
NKX3-1-202ENST00000523261 IL1RAPL2Q9NP60 686 aa16.51■□□□□ 0.23
NKX3-1-202ENST00000523261 PAG1Q9NWQ8 432 aa16.51■□□□□ 0.23
NKX3-1-202ENST00000523261 LINC01565O15544 149 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 ARIH2O95376 493 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 EYA4O95677 639 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 MMP3P08254 477 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 TXNP10599 105 aaKnown RBP16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 NBL1P41271 181 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 NUBP1P53384 320 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 PTK7Q13308 1070 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 AFG1LQ8WV93 481 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 TOP1MTQ969P6 601 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 PUS7LQ9H0K6 701 aaKnown RBP16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 LMAN2LQ9H0V9 348 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 HDAC6Q9UBN7 1215 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 PRR12Q9ULL5 1215 aa16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 KMT2BQ9UMN6 2715 aaPredicted RBP16.5■□□□□ 0.23
NKX3-1-202ENST00000523261 MYH7P12883 1935 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 NCOR2Q9Y618 2525 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 MINDY4BA8MYZ0 360 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 NFIBO00712 420 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 GRM6O15303 877 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 PRDM1O75626 825 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 RGS20O76081 388 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 ICAM1P05362 532 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 EDNRBP24530 442 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 SLC1A4P43007 532 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 PDE4DQ08499 809 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 ADAM15Q13444 863 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 KCTD1Q719H9 257 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 FRAT1Q92837 279 aaPredicted RBP16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 CHMP4CQ96CF2 233 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 PLIN4Q96Q06 1357 aa16.49■□□□□ 0.23
NKX3-1-202ENST00000523261 WDR87Q6ZQQ6 2873 aa16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 ZNF292O60281 2723 aa16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 EMSYQ7Z589 1322 aa16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 GSG1L2A8MUP6 293 aa16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 C5orf67F2Z3F1 127 aa16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 GALR2O43603 387 aaPredicted RBP16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 KRT37O76014 449 aa16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 MCCP23508 829 aa16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 PDE4BQ07343 736 aa16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 PLEKHG4Q58EX7 1191 aa16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 ZNF444Q8N0Y2 327 aaPredicted RBP16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 IGFLR1Q9H665 355 aa16.48■□□□□ 0.23
NKX3-1-202ENST00000523261 PTPDC1A2A3K4 754 aa16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 KDM4AO75164 1064 aa16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 UPP2O95045 317 aa16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 RB1P06400 928 aa16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 LINC00271P0C7V0 271 aa16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 CTNNB1P35222 781 aa16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 CCDC62Q6P9F0 684 aa16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 SLC30A10Q6XR72 485 aa16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 C7orf31Q8N865 590 aa16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 SMRP1Q8NCR6 262 aa16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 RHPN1Q8TCX5 695 aa16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 STRBPQ96SI9 672 aaKnown RBP16.47■□□□□ 0.23
NKX3-1-202ENST00000523261 CACNA1GO43497 2377 aa16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 MED19A0JLT2 244 aaPredicted RBP16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 PDGFBP01127 241 aaPredicted RBP16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 CALML3P27482 149 aa16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 NDUFV1P49821 464 aa16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 RRP1P56182 461 aaKnown RBP16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 ARHGAP1Q07960 439 aa16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 RCSD1Q6JBY9 416 aa16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 GIMAP6Q6P9H5 292 aa16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 RASGRP2Q7LDG7 609 aa16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 NEDD1Q8NHV4 660 aa16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 C11orf84Q9BUA3 381 aaPredicted RBP16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 BOLA2Q9H3K6 86 aa16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 CLEC1BQ9P126 229 aa16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 TPRP12270 2363 aaKnown RBP16.46■□□□□ 0.23
NKX3-1-202ENST00000523261 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.45■□□□□ 0.22
NKX3-1-202ENST00000523261 CASTP20810 708 aaKnown RBP16.45■□□□□ 0.22
NKX3-1-202ENST00000523261 BMPR1AP36894 532 aa16.45■□□□□ 0.22
NKX3-1-202ENST00000523261 PSEN2P49810 448 aa16.45■□□□□ 0.22
NKX3-1-202ENST00000523261 ZNF200P98182 395 aaPredicted RBP16.45■□□□□ 0.22
NKX3-1-202ENST00000523261 ALG1Q9BT22 464 aa16.45■□□□□ 0.22
NKX3-1-202ENST00000523261 RANBP17Q9H2T7 1088 aaKnown RBP16.45■□□□□ 0.22
NKX3-1-202ENST00000523261 ZNF287Q9HBT7 754 aa16.45■□□□□ 0.22
NKX3-1-202ENST00000523261 INCENPQ9NQS7 918 aa16.45■□□□□ 0.22
NKX3-1-202ENST00000523261 RSPH10B2B2RC85 870 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms