RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 SAMD3Q8N6K7 520 aa14.07□□□□□ -0.16
PTPRF-213ENST00000481019 NECAB1Q8N987 351 aa14.07□□□□□ -0.16
PTPRF-213ENST00000481019 SMARCC2Q8TAQ2 1214 aa14.07□□□□□ -0.16
PTPRF-213ENST00000481019 PGBD1Q96JS3 809 aa14.07□□□□□ -0.16
PTPRF-213ENST00000481019 HTATIP2Q9BUP3 242 aa14.07□□□□□ -0.16
PTPRF-213ENST00000481019 SLC26A6Q9BXS9 759 aa14.07□□□□□ -0.16
PTPRF-213ENST00000481019 BCAS3Q9H6U6 928 aa14.07□□□□□ -0.16
PTPRF-213ENST00000481019 TMEM260Q9NX78 707 aa14.07□□□□□ -0.16
PTPRF-213ENST00000481019 CCDC196A0A1B0GTZ2 297 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 SORBS3O60504 671 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 PFKFB2O60825 505 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 EIF3JO75822 258 aaKnown RBP14.06□□□□□ -0.16
PTPRF-213ENST00000481019 CTDNEP1O95476 244 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 ASGR1P07306 291 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 SCG2P13521 617 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 NEK4P51957 841 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 SP2Q02086 613 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 SEMA3FQ13275 785 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 ME3Q16798 604 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 GNASQ5JWF2 1037 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 SLC39A5Q6ZMH5 540 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 AIFM3Q96NN9 605 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 RIC8AQ9NPQ8 531 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 TELO2Q9Y4R8 837 aa14.06□□□□□ -0.16
PTPRF-213ENST00000481019 SMCO2A6NFE2 343 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 TXNP10599 105 aaKnown RBP14.05□□□□□ -0.16
PTPRF-213ENST00000481019 CCND2P30279 289 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 RTP1P59025 263 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 ARHGAP1Q07960 439 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 FSCN1Q16658 493 aaKnown RBP14.05□□□□□ -0.16
PTPRF-213ENST00000481019 TRIM60Q495X7 471 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 PPP1R18Q6NYC8 613 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 OR6J1Q8NGC5 347 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 SCFD2Q8WU76 684 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 PPP1R13LQ8WUF5 828 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 TSEN34Q9BSV6 310 aaKnown RBP14.05□□□□□ -0.16
PTPRF-213ENST00000481019 RTEL1Q9NZ71 1219 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 DDX41Q9UJV9 622 aaKnown RBP14.05□□□□□ -0.16
PTPRF-213ENST00000481019 ZMYND8Q9ULU4 1186 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-213ENST00000481019 PCDHA6Q9UN73 950 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 PCDHA8Q9Y5H6 950 aa14.05□□□□□ -0.16
PTPRF-213ENST00000481019 ST18O60284 1047 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 EVI5O60447 810 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 SYN1P17600 705 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 CLK2P49760 499 aaKnown RBP14.04□□□□□ -0.16
PTPRF-213ENST00000481019 ADCY7P51828 1080 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 TTLL4Q14679 1199 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 SNX17Q15036 470 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 CXCL17Q6UXB2 119 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 CUL5Q93034 780 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 MPHOSPH6Q99547 160 aaKnown RBP14.04□□□□□ -0.16
PTPRF-213ENST00000481019 RNF26Q9BY78 433 aaPredicted RBP14.04□□□□□ -0.16
PTPRF-213ENST00000481019 AP5M1Q9H0R1 490 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 VPS54Q9P1Q0 977 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 ATP11BQ9Y2G3 1177 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 Q9Y3F1 56 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 GRIN2DO15399 1336 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 DOCK5Q9H7D0 1870 aa14.04□□□□□ -0.16
PTPRF-213ENST00000481019 MOXD2PA6NHM9 499 aa14.03□□□□□ -0.16
PTPRF-213ENST00000481019 B4DLN1 442 aa14.03□□□□□ -0.16
PTPRF-213ENST00000481019 MCM2P49736 904 aa14.03□□□□□ -0.16
PTPRF-213ENST00000481019 MRPL12P52815 198 aaKnown RBP14.03□□□□□ -0.16
PTPRF-213ENST00000481019 PSMC6P62333 389 aa14.03□□□□□ -0.16
PTPRF-213ENST00000481019 PRPF38BQ5VTL8 546 aaKnown RBP14.03□□□□□ -0.16
PTPRF-213ENST00000481019 RASGRP4Q8TDF6 673 aa14.03□□□□□ -0.16
PTPRF-213ENST00000481019 IPO9Q96P70 1041 aaKnown RBP14.03□□□□□ -0.16
PTPRF-213ENST00000481019 SLKQ9H2G2 1235 aaPredicted RBP14.03□□□□□ -0.16
PTPRF-213ENST00000481019 GJB4Q9NTQ9 266 aa14.03□□□□□ -0.16
PTPRF-213ENST00000481019 MYH7BA7E2Y1 1941 aa14.02□□□□□ -0.16
PTPRF-213ENST00000481019 RBAK-RBAKDNI3L0D1 243 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 hCG_1984214I3L0E3 225 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 EDIL3O43854 480 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 FDPSP14324 419 aaKnown RBP14.02□□□□□ -0.17
PTPRF-213ENST00000481019 ITGB5P18084 799 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 UBA1P22314 1058 aaKnown RBP14.02□□□□□ -0.17
PTPRF-213ENST00000481019 SSRP1Q08945 709 aaKnown RBP14.02□□□□□ -0.17
PTPRF-213ENST00000481019 JAKMIP3Q5VZ66 844 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 PCNX4Q63HM2 1172 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 SH3RF1Q7Z6J0 888 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 ZNF713Q8N859 430 aaPredicted RBP14.02□□□□□ -0.17
PTPRF-213ENST00000481019 CYP2W1Q8TAV3 490 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 AFG1LQ8WV93 481 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 INPP4AQ96PE3 977 aaPredicted RBP14.02□□□□□ -0.17
PTPRF-213ENST00000481019 ZMYND12Q9H0C1 365 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 SPC25Q9HBM1 224 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 MRVI1Q9Y6F6 885 aa14.02□□□□□ -0.17
PTPRF-213ENST00000481019 ESYT2A0FGR8 921 aa14.01□□□□□ -0.17
PTPRF-213ENST00000481019 A6NJR5 290 aa14.01□□□□□ -0.17
PTPRF-213ENST00000481019 SPATA31C2B4DYI2 1134 aa14.01□□□□□ -0.17
PTPRF-213ENST00000481019 CPLX1O14810 134 aa14.01□□□□□ -0.17
PTPRF-213ENST00000481019 NKRFO15226 690 aaKnown RBP eCLIP14.01□□□□□ -0.17
PTPRF-213ENST00000481019 JAK2O60674 1132 aa14.01□□□□□ -0.17
PTPRF-213ENST00000481019 GH1P01241 217 aa14.01□□□□□ -0.17
PTPRF-213ENST00000481019 MYL3P08590 195 aa14.01□□□□□ -0.17
PTPRF-213ENST00000481019 CDK7P50613 346 aa14.01□□□□□ -0.17
PTPRF-213ENST00000481019 PURAQ00577 322 aaKnown RBP14.01□□□□□ -0.17
PTPRF-213ENST00000481019 TLE2Q04725 743 aa14.01□□□□□ -0.17
PTPRF-213ENST00000481019 ANKRD1Q15327 319 aa14.01□□□□□ -0.17
PTPRF-213ENST00000481019 NPY5RQ15761 445 aa14.01□□□□□ -0.17
PTPRF-213ENST00000481019 PCSK9Q8NBP7 692 aaKnown RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms