RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 GIPC1O14908 333 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 ARL10Q8N8L6 244 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 GRK7Q8WTQ7 553 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 THAP11Q96EK4 314 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 CHMP6Q96FZ7 201 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 VPS37BQ9H9H4 285 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 NOD1Q9Y239 953 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 TTC37Q6PGP7 1564 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 TBC1D8O95759 1140 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 PDE1BQ01064 536 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 TFCP2Q12800 502 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 TAF12Q16514 161 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 BEND6Q5SZJ8 279 aaPredicted RBP14.41□□□□□ -0.1
USP40-208ENST00000450966 DPH5Q9H2P9 285 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 MTMR6Q9Y217 621 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 RGS12O14924 1447 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 LOC102724428A0A0B4J2F2 783 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 MAGEA13PA6NCF6 341 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 GYG2O15488 501 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 SGSM2O43147 1006 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 TTC4O95801 387 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 SIK1P57059 783 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 PPP2R2AP63151 447 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 CEP55Q53EZ4 464 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 GID8Q9NWU2 228 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 SPATA31A6Q5VVP1 1343 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 JCADQ9P266 1359 aa14.41□□□□□ -0.1
USP40-208ENST00000450966 THAP12O43422 761 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 APOA1P02647 267 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 SFMBT2Q5VUG0 894 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 SULF1Q8IWU6 871 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 CERKQ8TCT0 537 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 SERPINI1Q99574 410 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 ZMYM4Q5VZL5 1548 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 NVLO15381 856 aaKnown RBP14.4□□□□□ -0.1
USP40-208ENST00000450966 HDAC4P56524 1084 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 FAM89AQ96GI7 184 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 CLASP1Q7Z460 1538 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 PFKFB2O60825 505 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 ACADSP16219 412 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 NUGGCQ68CJ6 796 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 ARHGEF25Q86VW2 580 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 PLA2G4DQ86XP0 818 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 PANX2Q96RD6 677 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 ABCC3O15438 1527 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 TARSL2A2RTX5 802 aaKnown RBP14.4□□□□□ -0.1
USP40-208ENST00000450966 C2orf54Q08AI8 447 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 CCDC117Q8IWD4 279 aaPredicted RBP14.4□□□□□ -0.1
USP40-208ENST00000450966 CCDC89Q8N998 374 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 TMEM87BQ96K49 555 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 NR1H4Q96RI1 486 aaPredicted RBP14.4□□□□□ -0.1
USP40-208ENST00000450966 ETNK1Q9HBU6 452 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 SEMA3EO15041 775 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 TNFAIP3P21580 790 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 ATP6V1G3Q96LB4 118 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 GPR101Q96P66 508 aaPredicted RBP14.4□□□□□ -0.1
USP40-208ENST00000450966 MCM8Q9UJA3 840 aa14.4□□□□□ -0.1
USP40-208ENST00000450966 KPNB1Q14974 876 aaKnown RBP14.39□□□□□ -0.11
USP40-208ENST00000450966 TYW1BQ6NUM6 668 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 VSTM4Q8IW00 320 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 ICA1LQ8NDH6 482 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 CYTH2Q99418 400 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 TM6SF1Q9BZW5 370 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 DIABLOQ9NR28 239 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 PLEKHG2Q9H7P9 1386 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 BACH1O14867 736 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 LONP2Q86WA8 852 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 ZNF408Q9H9D4 720 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 PLAAQ9Y263 795 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 STAT2P52630 851 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 KLHL30Q0D2K2 578 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 KLC3Q6P597 504 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 NEK9Q8TD19 979 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 FANCLQ9NW38 375 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 EHD2Q9NZN4 543 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 MAP3K4Q9Y6R4 1608 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 ARL1P40616 181 aaPredicted RBP14.39□□□□□ -0.11
USP40-208ENST00000450966 MLH1P40692 756 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 KCNJ6P48051 423 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 DNM2P50570 870 aa14.39□□□□□ -0.11
USP40-208ENST00000450966 OSBPL5Q9H0X9 879 aaPredicted RBP14.39□□□□□ -0.11
USP40-208ENST00000450966 BBOX1O75936 387 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 SYT2Q8N9I0 419 aaPredicted RBP14.38□□□□□ -0.11
USP40-208ENST00000450966 CEP19Q96LK0 163 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 ZNF229Q9UJW7 825 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 LEMD3Q9Y2U8 911 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 ZNF335Q9H4Z2 1342 aaPredicted RBP14.38□□□□□ -0.11
USP40-208ENST00000450966 ENC1O14682 589 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 TRIM37O94972 964 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 GJC1P36383 396 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 MRPS25P82663 173 aaKnown RBP14.38□□□□□ -0.11
USP40-208ENST00000450966 CNNM4Q6P4Q7 775 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 SEPT12Q8IYM1 358 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 CCT8L2Q96SF2 557 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 POLR2DO15514 142 aaKnown RBP14.38□□□□□ -0.11
USP40-208ENST00000450966 MED21Q13503 144 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 AGGF1Q8N302 714 aaeCLIP14.38□□□□□ -0.11
USP40-208ENST00000450966 C3orf20Q8ND61 904 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 LPXNO60711 386 aa14.38□□□□□ -0.11
USP40-208ENST00000450966 PCCAP05165 728 aaPredicted RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms